HPCC Resources and Services
For a description of HPCC clusters and equipment, click here.
A major part of the HPCC mission is maintaining the system software on the central clusters and the local grids, as well as the application software on the central clusters, local grids, and remote grids. Most of the standard open-source packages in the base Linux distribution are installed on our clusters. Beyond these, we have installed a number of additional packages, and can install new common-use software when required as long as it is appropriately licensed.
For software unique to a particular researcher or small research group that can be installed without root privileges, we encourage users to install and manage such software on their own. If you have a package that requires root privileges to install, or that will most likely be useful for a large number of HPCC users, please fill out the HPCC software request form at the link belowL http://www.depts.ttu.edu/hpcc/operations/requestsoftware.php
Some application packages and a few of the libraries that we install and maintain include:
- Intel compilers, debuggers, and math libraries
- Totalview debugger
- MPI software: Open MPI, MVAPICH2
- Math libraries: Intel MKL, Gotoblas, and FFTW
- Quantum Chemistry codes: NWChem
- Molecular dynamics codes: NAMD, Gromacs, Gamess, Venus, and Amber
- Math languages/application: R, Matlab, and Comsol
- Weather modeling codes: WRF, MM5, NCARG, and Netcdf
- On Janus, the Windows Cluster: GPM (Global Proteome Machine), ArcGIS and Saga-gis, ConventorWare, LSDYNA
Currently there are some 171 application directories in the hrothgar shared application file system. In addition HPCC staff has and will assist users to compile and build applications in the user's own directories.
Other HPCC Services
HPCC provides consulting services for a variety of applications that exploit serial and parallel computing environments to address application specific scientific computing challenges. Our services include working closely with researchers and their students in migrating computer programs from PC to Linux environments, code optimization and parallelization strategies, and introducing campus researchers to national scale resources wherever requested computing time exceeds campus limitations. The NSF TeraGrid and Texas major computing resources such as Ranger at TACC are some national scale resources for example. TTU HPCC is an active partner in the TACC Lonestar IV cluster. As a result TTU researchers have access to 9,000,000 core hours per year for the lifetime of the system.
We also help campus researchers find potential interdisciplinary and intercampus collaborations where computing is the common denominator. We do this by organizing seminars and meeting with various research groups on campus. We do this both for groups that are currently involved in compute modeling and those that are thinking about it. Please feel free to contact us at firstname.lastname@example.org if you would like our help.
If you need help in bidding a system either for a proposal or to purchase on a grant, we can help you in designing and getting a bid for an appropriate system.