IGCAST Publications

 

 

Articles under review

Wu, R., Liu, Z., Wang, J., Li, W., Qin, A., Yu, X., Liu, H., Guo, Ch., Zhao, Z., Zhang, Y., Zhou, Y., Sun, S., Liu, Y., Hu, M., Yang, J., Jan, M., Bawa, G., Rochaix, J.D., An, G., Herrera-Estrella, L., Tran, L.-S. P., Sun X. (2022). Identification of two bZIP transcription factors that regulate development of pavement and trichome cells in Arabidopsis thaliana by single-cell RNA-sequencing. https://doi.org/10.1101/2022.04.12.488054

Ge, X., Yu, X., Liu, Z., Yuan, J., Qin, A., Wang, Y., Chen, Y., Qin, W., Liu, Y., Liu, X., Zhou, Y., Wang, P., Yang, J., Liu, H., Zhao, Z., Hu, M., Zhang, Y., Sun, S., Herrera-Estrella, L., Tran, L.-S. P., Sun, X., Li, F. (2022). Dissection of a Cell Atlas of Developing Somatic Embryos in Cotton by Single-cell RNA-sequencing and Spatial Transcriptomic and Metabolomic Analyses. https://doi.org/10.21203/rs.3.rs-2100867/v1

 

Refereed Journals

2025

 

Aluko, O., Liu, Z., Zhou, Y., Liu, H., Qin, A., Zhao, Q., Li, M., Li, C., Kong, L., Yan, L., Ninkuu, V., Rochaix, J-D., Tran, L.-S. P., Sun, X. (2025). Chlorophyll a/b-binding Overexpression 2 regulates nitric oxide signaling in Arabidopsis response to sulfur deficiency. Current Plant Biology, Volume 42,100452. https://doi.org/10.1016/j.cpb.2025.100452

Barragán-Rosillo, A.C., Chávez Montes, R.A. and Herrera-Estrella, L. (2025). The role of DNA content in shaping chromatin architecture and gene expression. Plant J, 121: e70116. https://doi.org/10.1111/tpj.70116

Delgado-Baquerizo, M., Singh, B.K., Liu, Y.-R., Sáez-Sandino, T., Coleine, C., Muñoz-Rojas, M., Bastida, F. and Trivedi, P. (2025). Integrating ecological and evolutionary frameworks for SynCom success. New Phytol. https://doi.org/10.1111/nph.70112

Delgado-Baquerizo M., Eldridge DJ, Liu Y.-R., Liu Z.-W., Coleine C, Trivedi P. (2025). Soil biodiversity and function under global change. PLoS Biol 23(3): e3003093. https://doi.org/10.1371/journal.pbio.3003093

Du, J., Zhao, Z., Jin, L., Huang, L., Jin, D., Zheng, X., Wang, Q., Xu, W., Guo, H., Xing, X., Alolga, R.N., Tran, L.-S. P., Herrera-Estrella, L., Li, P., Yin, X., & Lu, X., (2025). Identification of a central regulator of ginkgolide biosynthesis in Ginkgo biloba that integrates jasmonate and light signaling. Proceedings of the National Academy of Sciences of the United States of America. 122 (6) e2408891122. https://doi.org/10.1073/pnas.2408891122

Ge, X., Yu, X., Liu, Z, Yuan, J., Qin, A., Wang, Y., Chen, Y., Qin, W., Liu, Y., Liu, X., Zhou, Y., Wang, P., Yang, J., Liu, H., Zhao, Z., Hu, M., Zhang, Y., Sun, S., Herrera-Estrella, L., Tran, L.-S. P., Sun, X., & Fuguang Li. (2025). Spatiotemporal transcriptome and metabolome landscapes of cotton somatic embryos. Nat Commun 16, 859 (2025). https://doi.org/10.1038/s41467-025-55870-6

Hu, M. and Liu, D. (2025). Unlocking the potential of genome editing in agriculture with tissue culture-free techniques. New Phytol. https://doi.org/10.1111/nph.70046

Kamruzzaman, M., Islam, H.M.T., Rahman, M.S. Ahmed, S., Lipi, L.F, Khan, M.A.R.,  Tran, L.-S. P., & A. M. K. Zakir Hossain. (2025). Assessing the impacts of future climate extremes on boro rice cultivation in the northeastern Haor region of Bangladesh: insights from CMIP6 multi-model ensemble projections. Theor Appl Climatol 156, 3. https://doi.org/10.1007/s00704-024-05270-5

Lakhssassi, N., Chhapekar, S.S., Devkar, V. Knizia, D., El Baze, A. Ye, H. Vuong, T., Patil, G.B., Nguyen, H.T., & Meksem K. (2025). Discovery of two tightly linked soybean genes at the qSCN10 (O) locus conferring broad-spectrum resistance to soybean cyst nematode. Commun Biol 8, 259. https://doi.org/10.1038/s42003-025-07633-8

Laza H., Bhattarai B., Mendu V., Burow M.D., Emendack Y., Sanchez J., Gupta A., Abdelrahman M., Tran, L.-S. P., Tissue D.T. and Payton P. (2025). Peanut leaf transcriptomic dynamics reveals insights into the acclimation response to elevated carbon dioxide under semiarid conditions. Front. Plant Sci. 15:1407574. doi: 10.3389/fpls.2024.1407574

Li, D., Jiao, Y., Wu, X., Bean, S.R. and Shi, Y.-C. (2025). Morphology, Composition, and Structure of Starches During Sorghum Seed Development. Cereal Chemistry, 102: 256-265. https://doi.org/10.1002/cche.10875

Li, L., Gupta, A., Zhu, C.  Xu, K., Watanabe, Y., Tanaka, M., Seki, M.,Mochida, K.,Kanno, Y., Seo, M., Nguyen, K.H. Tran, C.D., Chu, H.D., Yin, H., Jia, K.P., Tran, L.-S. P., Yin X., & Li, W. (2025). Strigolactone and karrikin receptors regulate phytohormone biosynthetic and catabolic processes. Plant Cell Rep 44, 60. https://doi.org/10.1007/s00299-025-03456-3

Ni, H., Yong-Villalobos, L., Gu, M., López-Arredondo, D. L., Chen, M., Geng, L., Xu, G., & Herrera-Estrella, L.R. (2025). Adaptive dynamics of extrachromosomal circular DNA in rice under nutrient stress. Nat Commun 16, 4150. https://doi.org/10.1038/s41467-025-59572-x

Nigam, D., Devkar, V., Dhiman, P., Shakoor, S., Liu, D., Patil, G.B. and Jiao, Y. (2025). Emerging frontiers in sorghum genetic engineering. Plant J, 121: e17244. https://doi.org/10.1111/tpj.17244

Nguyen, H.T., Khan, M.A.R., Nguyen, T.T., Pham, N.T., Nguyen, T.T. B., Anik, T.R., Nguyen, M.D., Li, M., Nguyen, K.H., Ghosh, U.K., Tran, L.-S. P., & Ha, C.V. (2025). Advancing Crop Resilience Through High-Throughput Phenotyping for Crop Improvement in the Face of Climate Change. Plants, 14(6), 907. https://doi.org/10.3390/plants14060907

Padukana, A., Nagaraja, G., Tran, L.-S. P., Jogaiah, S. (2025). Biomagnetic resonance: an innovative approach for the mitigation of plant diseases. Trends in Plant Science, Volume 30, Issue 3. https://doi.org/10.1016/j.tplants.2024.12.011

Samira, R.; Monsur, M.; Trina, N.A. (2025). How the Built Environment Shapes Children’s Microbiome: A Systematic Review. Microorganisms, 13, 950. https://doi.org/10.3390/microorganisms13040950

Sun, X., Qin, A., Wang, X. Ge, X., Liu, Z., Guo, C., Yu, X., Zhang, X., Lu, Y., Yang, J., He, J., Zhou, Y., Liu, Y., Hu, M., Liu, H., Zhao, Z., Hu, G., Li, W., Zang, X., Dai, S., Sun, S., Yong-Villalobos, L., Herrera-Estrella, L., Tran, L.-S. P.& Ma. X. (2025). Spatiotemporal transcriptome and metabolome landscapes of cotton fiber during initiation and early development. Nat Commun 16, 858 https://doi.org/10.1038/s41467-025-55869-z

Wang,S. Ye,H., Yang,C., Zhang,Y., Pu,J., Ren,Y., Xie,K., Wang,L., Zeng,D., He,H., Ji,H., Herrera-Estrella, L., Xu,& Chen,A. (2025). OsNLP3 and OsPHR2 orchestrate direct and mycorrhizal pathways for nitrate uptake by regulating NAR2.1–NRT2s complexes in rice. Proc. Natl. Acad. Sci. U.S.A. 122 (8) e2416345122, https://doi.org/10.1073/pnas.2416345122 

Yadav, H., Roberts, P.A., Lopez-Arredondo, D. (2025). Combating Root-Knot Nematodes (Meloidogyne spp.). Molecular Mechanisms to Resistant Crops. Plants 14, 1321. https://doi.org/10.3390/plants14091321

Yin,H.,  Ma, X., Wang, W., Xu, C., Xiang, X., Li, W., Li, J., Li, Y., Lam- Tran, L.-S. P., Zhang, B. (2025). Ameliorating drought resistance in Arabidopsis and alfalfa under water deficit conditions through inoculation with Bacillus tequilensis G128 and B. velezensis G138 derived from an arid environment. Plant Stress, Volume 15, 100727. https://doi.org/10.1016/j.stress.2024.100727 

Yin, H. Zhang, Z., Li, Z., Wang, W., Xu, C., Ma, X., Xiang, X., Tran, L.-S. P., Zhang B. (2025). UDP-glycosyltransferase gene OvIF7GT from Onobrychis viciifolia Scop. discovered through IISMTA confers drought tolerance to Arabidopsis thaliana. Physiologia Plantarum Vol. 177. e70214 https://doi.org/10.1111/ppl.70214

2024

Alyammahi, O., Kappachery, S., Sasi, S., Ghosh, R., Venkatesh, J., Varghese, N., Abdelrahman, M., Tran, L.-S. P., Gururani, M.A. (2024). Ectopic Expression of the Potato StD26 Encoding a Ribosomal Protein S27 Enhances Salt Tolerance in Arabidopsis thaliana. Journal of Plant Growth Regulation. https://doi.org/10.1007/s00344-023-11175-w

Alejo-Jacuinde, G., Chávez Montes, R.A., Gutierrez Reyes, C.D., Yong-Villalobos, L., Simpson, J., Herrera-Estrella, L. (2024). Gene family rearrangements and transcriptional priming drive the evolution of vegetative desiccation tolerance in Selaginella. The Plant Journal, (2024), doi: 10.1111/tpj.17169

Anik, T.R., Chu, H.D., Ahmed, M.S., Ha, C.V., Gangurde, S.S., Khan, M.A.R., Le, T.D., Le, D.T., Abdelrahman, M., Tran, L.-S. P. (2024). Genome-wide characterization of the glutathione S-transferase gene family in Phaseolus vulgaris reveals insight into the roles of their members in responses to multiple abiotic stresses. Plant Stress, Volume 12, 100489. https://doi.org/10.1016/j.stress.2024.100489

Bawa, G., Liu, Z., Yu, X., Tran, L.-S. P., Sun, X. Introducing single cell stereo-sequencing technology to transform the plant transcriptome landscape. (2024). Trends in Plant Science, Volume 29, Issue 2. https://doi.org/10.1016/j.tplants.2023.10.002

Bello-Bello, E., Herrera-Estrella, L. (2024). Breaking new ground: Decoding the root’s molecular circuits to penetrate compacted soil. Developmental Cell, Vol.59, Issue 4, page 431-433. https://doi.org/10.1016/j.devcel.2024.01.028

Chávez Montes, R.A., Mary, M.A, Rashel, R.H., Fokar, M., Herrera-Estrella, L., Lopez-Arredondo, D., Patiño, R. Hormetic and transcriptomic responses of the toxic alga Prymnesium parvum to glyphosate. (2024). Science of The Total Environment, Volume 954, 176451. https://doi.org/10.1016/j.scitotenv.2024.176451

De Jesús-Campos, D., García-Ortega, L.F., Fimbres-Olivarría, D., Herrera-Estrella, L., López-Elías, J.A., Hayano-Kanashiro, C. (2024) Transcriptomic analysis of Chaetoceros muelleri in response to different nitrogen concentrations reveals the activation of pathways to enable efficient nitrogen uptake. Gene, Volume 924,2024, 148589. https://doi.org/10.1016/j.gene.2024.148589

Dhingra, A., Shinde S., D’Agostino, L., Devkar V., Shinde, H., Rajurkar, A.B., Sonah, H., Vuong,T.D., Siebecker, M.G., Jiao, Y., Hancock, C.N., Nguyen, H.T., Deshmukh, R., Patil, G.B. (2024). Identification of novel germplasm and genetic loci for enhancing mineral element uptake in soybean. Environmental and Experimental Botany, Volume 219, 105643. https://doi.org/10.1016/j.envexpbot.2023.105643

Flores-Tinoco, V, Brito-Bello, A.A. Le, V.P., Lopez-Arredondo, D. (2024). Chapter 18 - Control of Biological Contamination in Microalgae Cultures. Woodhead Series in Bioenergy, Algal Bioreactors, Elsevier Science Ltd, Pages 239-262. https://doi.org/10.1016/B978-0-443-14058-7.00005-1.

Gupta, A., Kumar, M., Zhang, B., Tomar, M., Walia, A.K., Choyal, P., Saini, R.P., Potkule, J., Burritt, D.J., Sheri, Verma, P., Chandran, D., Tran, L.-S. P. (2024). Improvement of qualitative and quantitative traits in cotton under normal and stressed environments using genomics and biotechnological tools: A review. Plant Science, Volume 340,111937. https://doi.org/10.1016/j.plantsci.2023.111937

Gupta, A., Li, L., Zhu, C., Kun, K.,Jia, K.,Miao, Y., Li, W.,Tran, L.-S. P. (2024). Differential modulation of hormonal pathways by strigolactone and karrikin signaling. Plant Growth Regul 104, 1197–1205. https://doi.org/10.1007/s10725-024-01227-w

Gupta, A., Watanabe, Y., Ha, C., Abdelrahman, M., Li, W., Rahman,Md. M., Sultana, S., Nigam, D., Jiao,Y., Anik, T.R., Saha,G., Kojima, M., Sakakibara,H., Mochida, K., Tran, L.-S. P. (20204).Disruption in Jasmonic Acid Biosynthesis Influences Metabolism of Other Hormones in Arabidopsis. J Plant Growth Regul. https://doi.org/10.1007/s00344-024-11446-0

Hu, R., Zhang, J., Jawdy, S., Sreedasyam, A., Lipzen, A., Wang, M., Ng, V., Daum, C., Keymanesh, K., Liu, D., Hu, A., Chen, J. -G., Tuskan, G. A., Schmutz, J., & Yang, X. (2024). Transcriptomic Analysis of the CAM Species Kalanchoë fedtschenkoi Under Low- and High-Temperature Regimes. Plants, 13(23), 3444. https://doi.org/10.3390/plants13233444

Hossain, M.M., Sultana, F., Khan, S. Nayeema, J., Mostafa, M., Fer, H., Tran, L.-S. P., Mostofa, M.G., (2024). Carrageenans as biostimulants and bio-elicitors: plant growth and defense responses. Stress Biology 4, 3. https://doi.org/10.1007/s44154-023-00143-9

Khalil, M.I., Hassan, M.M., Samanta, S.C., Chowdhury, A.K., Hassan, M.Z., Ahmed, N.U., Somaddar, U., Ghosal, S., Robin, A.H.K., Nath, U.K., Mostofa, M.G., Burritt, D.J., Ha, C.V., Gupta, A., Tran, L.-S. P., Saha, G. (2024). Unraveling the genetic enigma of rice submergence tolerance: Shedding light on the role of ethylene response factor-encoding gene SUB1A-1. Plant Physiology and Biochemistry, Volume 206, 108224. https://doi.org/10.1016/j.plaphy.2023.108224

Khan, A., Tian, R., Bean, S.R., Yerka M., Jiao Y. (2024). Transcriptome and metabolome analyses reveal regulatory networks associated with nutrition synthesis in sorghum seeds. Commun Biol 7, 841. https://doi.org/10.1038/s42003-024-06525-7

Kandhol, N., Pandey, S., Pratap Singh, V. Herrera-Estrella, L., Tran, L.-S.P., And Kumar Tripathi, D. (2024). Link between plant phosphate and drought stress responses. Science Pater Journal. https://spj.science.org/doi/10.34133/research.0405

Kean-Galeno, T., Lopez-Arredondo, D., Herrera-Estrella, L. (2024). The Shoot Apical Meristem: An Evolutionary Molding of Higher Plants. Int. J. Mol. Sci. 2024, 25, 1519. https://doi.org/10.3390/ijms25031519

Kim, W-S., Gillman, J.D., Kim, S., Liu J., Janga, M.R., Stupar, R.M., Krishnan, H.B. (2024). Bowman–Birk Inhibitor Mutants of Soybean Generated by CRISPR-Cas9 Reveal Drastic Reductions in Trypsin and Chymotrypsin Inhibitor Activities. International Journal of Molecular Sciences. 25(11):5578. https://doi.org/10.3390/ijms25115578

Le, D.T., Ha, C.V., Nguyen, K.H., Chu,H.D., Zhu, C., Li, W., Watanabe, Y., Kojima, M., Takebayashi, Y., Sakakibara, H., Mochida, K., Tran, L.-S. P. (2024). Altering endogenous cytokinin content by GmCKX13 as a strategy to develop drought-tolerant plants. Plant Stress, Volume 14,100678. https://doi.org/10.1016/j.stress.2024.100678

Liu, D. Ellison, E.E., Myers, E.A., Donahue, L.I., Xuan, S., Swanson, R., Qi, S., Prichard, L.E., Starker, C.G., Voytas, D.F. (2024). Heritable gene editing in tomato through viral delivery of isopentenyl transferase and single-guide RNAs to latent axillary meristematic cells. Proceedings of the National Academy of Sciences of the United States of America. 121 (39) e2406486121 https://doi.org/10.1073/pnas.2406486121

Ma, X., Zhang, B., Xiang, X., Li, W., Li, J., Li, Y., Tran, L. -S. P., Yin, H. (2024). Characterization of Bacillus pacificus G124 and Its Promoting Role in Plant Growth and Drought Tolerance. Plants, 13(20), 2864. https://doi.org/10.3390/plants13202864

Mahmud, A., Islam, M.N., Islam, A.K.M.A., Islam, M.M., Ghosh, U.K., Hossain, M.S., Sheikh, A., Rahman, M.H.S., Tran, L.-S. P., Khan, M.A.R. (2024). Evaluation of yield-attributing parameters in Aus rice for enhancing productivity. Plant Genetic Resources: Characterization and Utilization. 2024;22(6):368-377. doi:10.1017/S1479262124000364

Mostafa, A., Gorafi, Y., Sulieman, S., Jogaiah, S., Gupta, A., Tsujimoto, H., Nguyen, H.T., Herrera-Estrella, L., Tran, L.-S. P., (2024). Wild grass-derived alleles represent a genetic architecture for the resilience of modern common wheat to stresses. The Plant Journal, (2024). https://doi.org/10.1111/tpj.16887

Nguyen, K. H., Li, Z., Wang, C., Ha, C.V., Tran, C.D., Abdelrahman, M., Pham, H.X., Trung, K.H., Khanh, T.D., Chu, H.D., Mostofa, M.G., Watanabe, Y., Wang, Y., Miao, Y., Mochida, K., Pal, S., Li, W., Tran, L.-S.P. (2024). Cytokinin and MAX2 signaling pathways act antagonistically in drought adaptation of Arabidopsis thaliana. Plant Stress,100484. https://doi.org/10.1016/j.stress.2024.100484

Ojeda-Rivera, J., Ulloa, M., Pérez-Zavala, F., Nájera-González, H., Roberts, P., Yong-Villalobos, L., Yadav H., Chávez Montes, R., Herrera-Estrella, L., Lopez-Arredondo, D. (2024). Enhanced phenylpropanoid metabolism underlies resistance to Fusarium oxysporum f. sp. vasinfectum race 4 infection in the cotton cultivar Pima-S6 (Gossypium barbadense L.) Front. Genet. 14:1271200. https://doi.org/10.3389/fgene.2023.1271200

Pérez-Zavala, F.G., Ojeda-Rivera, J.O., Herrera-Estrella, L., López-Arredondo, D. (2024). Beneficial Effects of Phosphite in Arabidopsis thaliana Mediated by Activation of ABA, SA, and JA Biosynthesis and Signaling Pathways. Plants 2024, Volume 13, Issue 13, 1873. https://doi.org/10.3390/plants13131873

Phogat, S., Lankireddy, S.V., Lekkala, S., Anche, V.C., Sripathi, R.V., Patil, G.B., Puppala N., Janga, M.R. (2024). Progress in genetic engineering and genome editing of peanuts: revealing the future of crop improvement. Physiol Mol Biol Plants. https://doi.org/10.1007/s12298-024-01534-6

Rahman, M.M., Mostofa, M.G., Keya, S.S., Ghosh, P.K., Abdelrahman, M., Anik, T.R., Gupta, A., Tran, L.-S.P. (2024). Jasmonic acid priming augments antioxidant defense and photosynthesis in soybean to alleviate combined heat and drought stress effects. Plant Physiology and Biochemistry, Volume 206. https://doi.org/10.1016/j.plaphy.2023.108193

Shefali, M., Ashish Kumar, S., Aamir, W.K., Tran, L.-S. P., Henry, T. N. (2024). The era of panomics-driven gene discovery in plants. Trends in Plant Science. 995, VL - 29. https://doi.org/10.1016/j.tplants.2024.03.007

Sudhakaran, S., Mandlik, R., Kumawat, S., Raturi, G., Gupta, S.K., Shivaraj, S.M.,Patil, G.B., Deshmukh, R., Sharma, T.J., Sonah, H. (2024). Evolutionary analysis of tonoplast intrinsic proteins (TIPs) unraveling the role of TIP3s in plant seed development. Plant Physiology and Biochemistry, Volume 215,109022. https://doi.org/10.1016/j.plaphy.2024.109022

Sulieman, S., Ha, C.V., Le, D.T., Abdelrahman, M., Tran, C.D., Watanabe, Y., Tanaka, M., Ulhassan, Z., Sheteiwy, M.S., Gangurde, S.S., Mochida, K., Seki, M., Tran, L.-S. P. (2024). Comparative transcriptome analysis of respiration-related genes in nodules of phosphate-deficient soybean (Glycine max cv. Williams 82). Plant Stress, Volume 11,100368. https://doi.org/10.1016/j.stress.2024.100368

Sulieman, S., Sheteiwy, M.S.,Abdelrahman, M.,  Tran, L.-S. P. (2024). γ-Aminobutyric acid (GABA) in N2-fixing-legume symbiosis: Metabolic flux and carbon/nitrogen homeostasis in responses to abiotic constraints. Plant Physiology and Biochemistry, Volume 207,108362. https://doi.org/10.1016/j.plaphy.2024.108362

Sultana, S., Rahman, M.M., Das, A.K., Haque, M.A., Rahman, M.A., Islam, S.M.N., Ghosh, P.K., Keya, S.S., Tran, L.-S. P., Mostofa, M.G. (2024). Role of salicylic acid in improving the yield of two mung bean genotypes under waterlogging stress through the modulation of antioxidant defense and osmoprotectant levels. Plant Physiology and Biochemistry. Volume 206, 108230, https://doi.org/10.1016/j.plaphy.2023.108230

Tan, W., Nian, H., Tran, L.-S. P., Jin, J., Lian, T. (2024). Small peptides: novel targets for modulating plant–rhizosphere microbe interactions.  Trends in Microbiology. Vol. 32, Issue 11. https://doi.org/10.1016/j.tim.2024.03.011

Tian, L., Wang, J., Chen, H., Li, W., Tran, L.-S. P., Tian, C. (2024). Integrative multi-omics approaches reveal that Asian cultivated rice domestication influences its symbiotic relationship with arbuscular mycorrhizal fungi. Pedosphere, Volume 34, Issue 2. https://doi.org/10.1016/j.pedsph.2023.09.007

Tian, R., Nájera-González, H.R., Nigam, D., Khan, A., Chen, J., Xin, Z., Herrera-Estrella, L., Jiao, Y. (2024). A leucine-rich repeat receptor kinase as a regulator in the cuticular wax deposition in sorghum. Journal of Experimental Botany, 2024; erae319, https://doi.org/10.1093/jxb/erae319

Wu, R., Liu, Z., Sun, S., Qin, A., Liu, H., Zhou, Y., Li, W., Liu, Y., Hu, M., Yang, J., Rochaix, J-D., An, G., Herrera-Estrella L., Tran, L.-S. P., Sun X. (2024). Identification of bZIP Transcription Factors That Regulate the Development of Leaf Epidermal Cells in Arabidopsis thaliana by Single-Cell RNA Sequencing. Int. J. Mol. Sci. 2024, 25, 2553. https://doi.org/10.3390/ijms25052553

Xie, X., Liu, Y., Chen, G., Turatsinze, A. N., Yue, L., Ye, A., Zhou, Q., Wang, Y., Zhang, M., Zhang, Y., Li, Z., Tran, L.-S. P., Wang, R. (2024). Granular bacterial inoculant alters the rhizosphere microbiome and soil aggregate fractionation to affect phosphorus fractions and maize growth. Science of The Total Environment, Volume 912,169371. https://doi.org/10.1016/j.scitotenv.2023.169371

Yi, F., Li, Y., Song, A., Shi, X., Hu, S., Wu, S., Shao, L., Chu, Z., Xu, K., Li, L., Tran, L.-S. P., Li, W., Cai, Y. (2024). Positive roles of the Ca2+ sensors GbCML45 and GbCML50 in improving cotton Verticillium wilt resistance. Molecular Plant Pathology, 25, e13483. https://doi.org/10.1111/mpp.13483

Yuli, D., Heng, Z., Kunpeng, J., Zongyan, C., Shican, X., Tran, L.-S. P., Jinggong, G., Weiqiang, L., Kun, L. (2024). Role of abscisic acid-mediated stomatal closure in responses to pathogens in plants. Physiologia Plantarum. Volume 176, Issue 1, e14135. https://doi.org/10.1111/ppl.14135

Zhang, P., Liu, F., Abdelrahman, M., Song, Q., Wu, F., Li, R., Wu, M., Herrera-Estrella, L., Tran, L.-S.P., Xu, J. (2024). ARR1 and ARR12 modulate arsenite toxicity responses in Arabidopsis roots by transcriptionally controlling the actions of NIP1;1 and NIP6;1. Plant J. https://doi.org/10.1111/tpj.17065

Zhao, Y., Liu, S., Liu, H., Wang, F., Dong, Y., Wu, G., Li, Y., Wang, W., Tran, L.-S. P., Li, W., (2024). Multi-objective ecological restoration priority in China: Cost-benefit optimization in different ecological performance regimes based on planetary boundaries. Journal of Environmental Management, Vol., 356,120701. https://doi.org/10.1016/j.jenvman.2024.120701

2023

Alejo-Jacuinde, G., Nájera-González, H.R., Chávez Montes, R.A., Gutierrez Reyes, C.D., Barragán-Rosillo, A.C., Perez Sanchez, B., Mechref ,Y., López-Arredondo, D., Yong-Villalobos, L., Herrera-Estrella, L. (2023). Multi-omic analyses reveal the unique properties of chia (Salvia hispanica) seed metabolism. Commun Biol 6, 820. https://doi.org/10.1038/s42003-023-05192-4

Anik, T.R., Mostofa, M.G., Rahman, M.M., Khan, M.A.R., Ghosh, P.K., Sultana, S., Das, A.K., Hossain, M.S., Keya, S.S., Rahman, M.A., Ghosh, P.K., Rahman, M.A., Jahan, N., Gupta, A., Tran, L.-S. P. (2023). Zn Supplementation Mitigates Drought Effects on Cotton by Improving Photosynthetic Performance and Antioxidant Defense Mechanisms. Antioxidants,12, 854. https://doi.org/10.3390/antiox12040854

Ávalos-Rangel, A., Ruiz-Herrera, L.F., Gutiérrez-Alanis, D., Herrera-Estrella, L., Raya-González, J., López-Bucio, J.(2023). CLE14 Peptide Impairs Root Tip Regeneration and Callogenesis in Arabidopsis. J Plant Growth Regul. https://doi.org/10.1007/s00344-023-11197-4

Brito-Bello, A. A., & Lopez-Arredondo D. (2023). Bioactive Compounds with Pesticide Activities Derived from Aged Cultures of Green Microalgae. Biology 12, no. 8: 1149. https://doi.org/10.3390/biology12081149

Chávez Montes, R. A., Ulloa, M., Biniashvili, T., Zackay, A., Kfir, N., Lopez-Arredondo, D., Herrera-Estrella, L. (2023). Assembly and annotation of the Gossypium barbadense L. “Pima-S6” genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes. BMC Genomics, Vol.24. https://doi.org/10.1186/s12864-022-09102-6

D’Agostino, L.W., Yong-Villalobos, L., Herrera-Estrella, L., Patil, G.B. (2023). Development of High-Quality Nuclei Isolation to Study Plant Root–Microbe Interaction for Single-Nuclei Transcriptomic Sequencing in Soybean. Plants, 12(13):2466. https://doi.org/10.3390/plants12132466

Flores Tinoco, V., Herrera-Estrella, L., Lopez-Arredondo, D.(2023). Back to primary endosymbiosis: from plastids to artificial photosynthetic life-forms. Trends in Plant Science. https://doi.org/10.1016/j.tplants.2023.03.026.

Herrera-Ubaldo, H., Nájera-González, H.R., Luna-García, V, Marsch-Martínez, N., de Folter S. (2023). Hormone immunolabeling in resin-embedded Arabidopsis tissues. STAR Protocols, Volume 4, Issue 3. https://doi.org/10.1016/j.xpro.2023.102514.

Hossain, M.M., Sultana, F., Li, W., Tran, L.-S.P., Mostofa, M.G.(2023). Sclerotinia sclerotiorum (Lib.) de Bary: Insights into the Pathogenomic Features of a Global Pathogen. Cells,12, 1063. https://doi.org/10.3390/cells12071063

Jiao, Y., Nigam, D., Barry, K., Daum C., Yoshinaga, Y., Lipzen, A., Khan, A., Parasa, S-P., Wei S., Lu, Z., Tello-Ruiz, M., Dhiman, P., Burow, G., Hayes, C., Chen, J., Brandizzi, F., Mortimer J., Ware, D., Xi Z.(2023). A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes.  The Plant Journal, Volume 116, Issue 6, 1365-313X https://doi.org/10.1111/tpj.16582

Khan, A., Khan, N.A., Bean, S.R., Chen, J., Xin, Z., Jiao, Y. (2023).Variations in Total Protein and Amino Acids in the Sequenced Sorghum Mutant Library. Plants, 12, 1662. https://doi.org/10.3390/plants12081662

Khan, M.A.R.; Mahmud, A., Ghosh, U.K., Hossain, M.S., Siddiqui, M.N., Islam, A.K.M.A., Anik, T.R., Rahman, M.M., Sharma, A., Abdelrahman, M., Ha, C., Mohammad G.M., Tran, L. S. P. (2023) Exploring the Phenotypic and Genetic Variabilities in Yield and Yield-Related Traits of the Diallel-Crossed F₅ Population of Aus Rice. Plants,12, 3601. https://doi.org/10.3390/plants12203601

Khan, T.A., Kappachery, S., Karumannil, S., AlHosani, M., Almansoori, N., Almansoori, H., Yusuf, M., Tran, L.-S.P., Gururani, M.A. (2023). Brassinosteroid Signaling Pathways: Insights into Plant Responses under Abiotic Stress. Int. J. Mol. Sci., 24, 17246. https://doi.org/10.3390/ijms242417246

Kandhol, N., Pandey, S., Singh, V.P, Herrera-Estrella, L., López Bucio, J., Tran, L.-S. P., Tripathi, D.K. (2023). Bacterial community and root endodermis: a complementary relationship. Trends in Plant Science. https://doi.org/10.1016/j.tplants.2023.03.021

Nguyen, H.M., Ha, C.V., Le, V.P., Bui, H.T., Wirschell, M., Keya, S.S., Li,W., Li, M., Pham, N.T., Do, A.M., Le M.Q., Anik T.R., Tran, L.-S. P. (2023). Improvement of Photosynthetic Performance by Acetic Acid to Enhance Drought Tolerance in Common Bean (Phaseolus vulgaris).  J Plant Growth Regul. 42:7116-28. https://doi.org/10.1007/s00344-023-11001-3

Nwoko, C. L., Kshetry, A. O., Devkar, V., Patil, G. B. (2023). An Improved Method for Protoplast Isolation and Gene-Editing from Soybean Root, Callus and Transgenic Hairy-Roots. Journal of Plant Biology and Crop Research, 6(2): 1088. 

Ojha, A., Zhang, F., Patil, G. B. (2023). Genome editing and chromosome engineering in plants. The Plant Genome, 16(2) e20352. https://doi.org/10.1002/tpg2.20352

Rico-Cambron, T.Y., Bello-Bello, E., Martínez, O., Herrera-Estrella L. (2023). A non-invasive method to predict drought survival in Arabidopsis using quantum yield under light conditions. Plant Methods 19, 127. https://doi.org/10.1186/s13007-023-01107-w

Saini, D.K., Impa, S. M., McCallister, D., Patil, G.B., Noureddine, A., Glen, R., Jaconis, S. Y., Jagadish, K. S. V. (2023). High day and night temperatures impact on cotton yield and quality—current status and future research direction. J Cotton Res 6, 16. https://doi.org/10.1186/s42397-023-00154-x

Samira, R., Samayora, L.F., Holland, J.,Balint-Kurti, P. J. (2023). Characterization of a host-specific toxic activity produced by Bipolaris cookei, causal agent of Target Leaf Spot of Sorghum. https://doi.org/10.1094/PHYTO-11-22-0427-R

Sharma, A., Gupta, A., Ramakrishnan, M., Ha, C.V., Zheng, B., Bhardwaj, M., Tran, L.-S. P., (2023). Roles of abscisic acid and auxin in plants during drought: A molecular point of view. Plant Physiol Biochem. Nov;204:108129. https://doi.org/10.1016/j.plaphy.2023.108129 

Thakral, V., Sharma, Y., Mandlik, R., Kumawat, S., Patil, G., Sonah, H., Isenring, P., Bélanger, R., Sharma, T.J., Deshmukh, R. (2023). Identification of VrNIP2-1 aquaporin with novel selective filter regulating the transport of beneficial as well as hazardous metalloids in mungbean (Vigna radiata L.) Plant Physiology and Biochemistry. https://doi.org/10.1016/j.plaphy.2023.108057

Vats, S., Kumar, V., Mandlik, R., Patil, G., Sonah, H., Roy, J., Sharma, T.R., Deshmukh, R. (2023). Reference Guided De Novo Genome Assembly of Transformation Pliable Solanum lycopersicum cv. Pusa Ruby. Genes, 14, 570. https://doi.org/10.3390/genes14030570

Vats, S., Shivaraj, S. M., Sonah, H., Pati, G., Roy, J., Sharma, T.J.,Deshmukh, R. (2023). Efficient Regeneration and Agrobacterium-Mediated Transformation Method For Cultivated and Wild Tomato. Plant Mol Biol Rep. https://doi.org/10.1007/s11105-023-01374-w

Wang, L., Jia, X., Xu, L., Yu, J., Ren, S., Yang, Y., Wang, K., López-Arredondo, D., Herrera-Estrella, L., Lambers, H., Yi, K. (2023). Engineering microalgae for water phosphorus recovery to close the phosphorus cycle. Plant Biotechnol J. Vol.21, Issue 7. https://doi.org/10.1111/pbi.14040

Xin, Z., Jiao, Y., Burow, G., Hayes, C., Chen, J., Burke, J., Pugh, N.A., Ware, D., (2023). Registration of 252 sequenced sorghum mutants as a community reverse genetic resource. Journal of Plant Registration. 17, 599–604. https://doi.org/10.1002/plr2.20296.

Yi, F., An, G., Song, A., Cheng, K., Liu, J., Wang, C., Wu, S., Wang, P., Zhu, J., Liang, Z., Chang, Y., Chu, Z., Cai, C., Zhang, X., Wang, P., Chen, A., Xu, J., Burritt, D. J., Herrera-Estrella, L., Tran, L.-S. P., Li, W.,Cai, Y. (2023). Strigolactones positively regulate Verticillium wilt resistance in cotton via crosstalk with other hormones. Plant Physiology, Plant Physiol192:945-66. https://doi.org/10.1093/plphys/kiad053

Yin, X., Xiang, Y., Huang, F-Q., Chen, Y., Ding, H., Du, J., Chen, X., Wang, X., Wei, X., Cai, Y-Y., Gao, W., Guo, D., Alolga, R.N., Kan, X., Zhang, B., Alejo-Jacuinde, G., Li, P., Tran, L.-S. P.,Herrera-Estrella, L., Lu, X., Qi, L-W. (2023). Comparative genomics of the medicinal plants Lonicera macranthoides and L. japonica provides insight into genus genome evolution and hederagenin-based saponin biosynthesis. Plant Biotechnol. J., Vol.21, Issue 11. https://doi.org/10.1111/pbi.14123

Xin, Z., Jiao, Y., Burow, G., Hayes, C., Chen, J., Burke, J., Pugh, N.A., Ware, D. (2023). Registration of 252 sequenced sorghum mutants as a community reverse genetic resource. Journal of Plant Registration. 1. 17, 599–604. https://doi.org/10.1002/plr2.20296

Zahedi, S.M., Hosseini, M.S., Karimi, M., Gholami, R., Amini, M, Abdelrahman, M., Tran, L.-S.P. (2023). Chitosan-based Schiff base-metal (Fe, Cu, and Zn) complexes mitigate the negative consequences of drought stress on pomegranate fruits. Plant Physiol Biochem. Mar;196:952-964. https://doi.org/10.1016/j.plaphy.2023.02.021

2022

Abdelrahman, M., Mostofa, M. G., Tran, C. D., El-sayed, M., Li, W., Sulieman, S., Tanaka, M., Seki, M., Tran, L.-S.P. (2022). The karrikin receptor Karrikin Insensitive2 positively regulates heat stress tolerance in Arabidopsis thaliana. Plant and Cell Physiology., Vol. 63, Pages 1914–1926. https://doi.org/10.1093/PCP/PCAC112

Alejo-Jacuinde, G., & Herrera-Estrella, L. (2022). Exploring the high variability of vegetative desiccation tolerance in pteridophytes. Plants 2022, Vol. 11, Page 1222. https://doi.org/10.3390/PLANTS11091222

Alejo-Jacuinde, G., Kean-Galeno, T., Martínez-Gallardo, N., Tejero-Díez, J. D., Mehltreter, K., Délano-Frier, J. P., Oliver, M. J., Simpson, J., Herrera-Estrella, L. (2022). Viability markers for determination of desiccation tolerance and critical stages during dehydration in Selaginella species. Journal of Experimental Botany, Vol. 73, Pages 3898–3912. https://doi.org/10.1093/JXB/ERAC121

Alolga, R. N., Wang, F., Zhang, X., Li, J., Tran, L. S. P., Yin, X. (2022). Bioactive compounds from the Zingiberaceae family with known antioxidant activities for possible therapeutic uses. Antioxidants, Vol. 11, Page 1281. https://doi.org/10.3390/ANTIOX11071281

Aragón-Raygoza, A., Herrera-Estrella, L., Cruz-Ramírez, A. (2022). Transcriptional analysis of Ceratopteris richardii young sporophyte reveals conservation of stem cell factors in the root apical meristem. Frontiers in Plant Science, Vol. 13. https://doi.org/10.3389/fpls.2022.924660

Bello, E. B., Rico-Cambron, T. Y., Ramírez-Ortiz, L.A., Álvarez, R. R., Herrera-Estrella, L. (2022). ROOT PENETRATION INDEX 3, a major quantitative trait locus associated with root system penetrability in Arabidopsis. Journal of Experimental Botany, Vol. 73, Pages 4716–4732. https://doi.org/10.1093/jxb/erac188

Bello-Bello, E., López-Arredondo, D., Rico-Chambrón, T. Y., Herrera-Estrella, L. (2022). Conquering compacted soils: uncovering the molecular components of root soil penetration. Trends in Plant Science, Vol. 27, Pages 814-827. https://doi.org/10.1016/J.TPLANTS.2022.04.001

Bhardwaj, S., Devkar ,V., Kumar, A., Alisha, A., Sharma, S., Deshmukh, R.K., Patil, G. (2022). Advances and Applicability of Genotyping Technologies in Cotton Improvement.  Book Editor(s): Humira Sonah, Vinod Goyal, S.M. Shivaraj, Rupesh K. Deshmukh. https://doi.org/10.1002/9781119745686.ch11

Chávez Montes, R. A., Haber, A., Pardo, J., Powell, R. F., Divisetty, U. K., Silva, A. T., Hernández-Hernández, T., Silveira, V., Tang, H., Lyons, E., Herrera Estrella, L. R., VanBuren, R., Oliver, M. J. (2022). A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species. Proceedings of the National Academy of Sciences of the United States of America, Vol.19, e2118886119. https://doi.org/10.1073/pnas.2118886119

Das, A. K., Anik, T. R., Rahman, M. M., Keya, S. S., Islam, M. R., Rahman, M. A., Sultana, S., Ghosh, P. K., Khan, S., Ahamed, T., Ghosh, T. K., Tran, L.-S. P., Mostofa, M. G. (2022). Ethanol Treatment Enhances Physiological and Biochemical Responses to Mitigate Saline Toxicity in Soybean. Plants 2022, Vol. 11, Page 272. https://doi.org/10.3390/PLANTS11030272

Feng, Z., Liang, X., Tian, H., Watanabe, Y., Nguyen, K. H., Tran, C. D., Abdelrahman, M., Xu, K., Mostofa, M. G., Ha, C.V., Mochida, K., Tian, C., Tanaka, M., Seki, M., Liang, Z., Miao, Y., Tran, L.-S. P., Li, W. (2022). SUPPRESSOR of MAX2 1 (SMAX1) and SMAX1-LIKE2 (SMXL2) Negatively Regulate Drought Resistance in Arabidopsis thaliana. Plant and Cell Physiology. Vol. 63, Pages 1900–1913. https://doi.org/10.1093/PCP/PCAC080

Gladman, N., Olson, A., Wei, S., Chougule, K., Lu, Z., Tello-Ruiz, M., Meijs, I., van Buren, P., Jiao, Y., Wang, B., Kumar, V., Kumari, S., Zhang, L., Burke, J., Chen, J., Burow, G., Hayes, C., Emendack, Y., Xin, Z., & Ware, D. (2022). SorghumBase: a web-based portal for sorghum genetic information and community advancement. Planta, Vol. 255, Page 1–8.  https://doi.org/10.1007/s00425-022-03821-6

Gupta A., Bhardwaj M., Tran, L.-S. (2022). Integration of Auxin, Brassinosteroid and Cytokinin in the Regulation of Rice Yield. Plant and Cell Physiology, Volume 63, Issue 12, Pages 1848–1856, https://doi.org/10.1093/pcp/pcac149

Han, J., Lopez-Arredondo, D., Yu, G., Wang, Y., Wang, B., Wall, S. B., Zhang, X., Fang, H., Barragán-Rosillo, A. C., Pan, X., Jiang, Y., Chen, J., Zhang, H., Zhou, B. L., Herrera-Estrella, L., Zhang, B., Wang, K. (2022). Genome-wide chromatin accessibility analysis unveils open chromatin convergent evolution during polyploidization in cotton. Proceedings of the National Academy of Sciences of the United States of America, 119(44), e2209743119. https://doi.org/10.1073/pnas.2209743119

Ha, C.V., Golam Mostofa, M., Huu Nguyen, K., Duy Tran, C., Watanabe, Y., Li, W., Osakabe, Y., Sato, M., Toyooka, K., Tanaka, M., Seki, M., Burritt, D. J., Marie Anderson, C., Zhang, R., Mai Nguyen, H., Phuong Le, V., Thuy Bui, H., Mochida, K., Tran, L.-S. P. (2022). The histidine phosphotransfer AHP4 plays a negative role in Arabidopsis plant response to drought. The Plant Journal, Vol.111, Pages 1732–1752. https://doi.org/10.1111/tpj.15920

Hopp, H. E., Spangenberg, G., Herrera-Estrella, L. (2022). Editorial: Plant Transformation. Frontiers in Plant Science, Vol. 13. https://doi.org/10.3389/fpls.2022.876671

Hossain, M. S., Abdelrahman, M., Tran, C. D., Nguyen, K. H., Chu, H. D., Watanabe, Y., Fujita, M., Tran, L.-S. P. (2022). Modulation of osmoprotection and antioxidant defense by exogenously applied acetate enhances cadmium stress tolerance in lentil seedlings. Environmental Pollution, Vol. 308. https://doi.org/10.1016/J.ENVPOL.2022.119687

Kandhol, N., Singh, V. P., Herrera-Estrella, L., Tran, L.-S. P., Tripathi, D. K. (2022). Arsenite: the umpire of arsenate perception and responses in plants. Trends in Plant Science, Vol.27, Pages 420-422. https://doi.org/10.1016/J.TPLANTS.2022.02.005

Kandhol, N., Singh, V. P., Herrera-Estrella, L., Tran, L.-S. P., Tripathi, D. K. (2022). Nanocarrier spray: a nontransgenic approach for crop engineering. Trends in Plant Science. Vol. 28, Pages 259-261. https://doi.org/10.1016/J.TPLANTS.2022.12.015

Keya, S. S., Mostofa, M. G., Mezanur Rahman, M., Das, A. K., Abiar Rahman, M., Anik, T. R., Sultana, S., Arifur Rahman Khan, M., Robyul Islam, M., Watanabe, Y., Mochida, K., Tran, L.-S. P. (2022). Effects of glutathione on waterlogging-induced damage in sesame crop. Industrial Crops and Products, Vol.185. https://doi.org/10.1016/J.INDCROP.2022.115092

La, H. V., Chu, H. D., Tran, C. D., Nguyen, K. H., Le, Q. T. N., Hoang, C. M., Cao, B. P., Pham, A. T. C., Nguyen, B. D., Nguyen, T. Q., van Nguyen, L., Ha, C. van, Le, H. T., Le, H. H., Le, T. D., Tran, L.-S. P. (2022). Insights into the gene and protein structures of the CaSWEET family members in chickpea (Cicer arietinum), and their gene expression patterns in different organs under various stress and abscisic acid treatments. Gene, Vol. 819. https://doi.org/10.1016/J.GENE.2022.146210

Lan, T., Leppälä, K., Tomlin, C., Talbot, S. L., Sage, G. K., Farley, S. D., Shideler, R. T., Bachmann, L., Wiig, Ø., Albert, V. A., Salojärvi, J., Mailund, T., Drautz-Moses, D. I., Schuster, S. C., Herrera-Estrella, L., Lindqvist, C. (2022). Insights into bear evolution from a Pleistocene polar bear genome. Proceedings of the National Academy of Sciences of the United States of America, Vol. 119.  https://doi.org/10.1073/pnas.2200016119

Li, W., Sun, Y., Li, K., Tian, H., Jia, J., Zhang, H., Wang, Y., Wang, H., Bi, B., Guo, J., Tran, L.-S. P., Miao, Y. (2022). Sinapate esters eediate UV-B-induced stomatal closure by regulating nitric oxide, hydrogen peroxide, and malate accumulation in Arabidopsis thaliana. Plant and Cell Physiology, Vol. 63, Pages 1890–1899. https://doi.org/10.1093/PCP/PCAC059

Marsch-Martínez, N., Reyes-Olalde, J. I., Chalfun-Junior, A., Bemer, M., Durán-Medina, Y., Ochoa-Sánchez, J. C., Guerrero-Largo, H., Herrera-Ubaldo, H., Mes, J., Chacón, A., Escobar-Guzmán, R., Pereira, A., Herrera-Estrella, L., Angenent, G. C., Delaye, L., de Folter, S. (2022). Twisting development, the birth of a potential new gene. IScience, Vol.25. https://doi.org/10.1016/J.ISCI.2022.105627

Medina-Paz, F., Herrera-Estrella, L., Heil, M. (2022). All set before flowering: A 16S gene amplicon-based analysis of the root microbiome recruited by common bean (Phaseolus vulgaris) in its centre of domestication. Plants, Vol.11. https://doi.org/10.3390/plants11131631

Mostofa, M. G., Abdelrahman, M., Rahman, Md. M., Tran, C. D., Nguyen, K. H., Watanabe, Y., Itouga, M., Li, W., Wang, Z., Mochida, K., Tran, L.-S. P. (2022). Karrikin receptor KAI2 coordinates salt tolerance mechanisms in Arabidopsis thaliana. Plant and Cell Physiology. Volume 63, Pages 1927–1942. https://doi.org/10.1093/PCP/PCAC121

Mostofa, M. G., Rahman, M. M., Ghosh, T. K., Kabir, A. H., Abdelrahman, M., Rahman Khan, M. A., Mochida, K., Tran, L.-S. P. (2022). Potassium in plant physiological adaptation to abiotic stresses. Plant Physiology and Biochemistry, Vol. 186, Pages 279–289. https://doi.org/10.1016/J.PLAPHY.2022.07.011

Nasr Esfahani, M., Kusano, M., Abdelrahman, M., Nguyen, K. H., Watanabe, Y., Mochida, K., Burritt, D. J., Tran, L.-S. P. (2022). Differential metabolic rearrangements in the roots and leaves of Cicer arietinum caused by single or double nitrate and/or phosphate deficiencies. The Plant Journal, Vol.111, Pages 1643–1659. https://doi.org/10.1111/TPJ.15913

Ojeda-Rivera, J. O., Ulloa, M., Roberts, P. A., Kottapalli, P., Wang, C., Nájera-González, H. R., Payton, P., Lopez-Arredondo, D., Herrera-Estrella, L. (2022). Root-Knot nematode resistance in Gossypium hirsutum determined by a constitutive defense-response transcriptional program avoiding a fitness penalty. Frontiers in Plant Science, Vol.13. https://doi.org/10.3389/fpls.2022.858313

Patil, G. B., Stupar, R. M., Zhang, F. (2022). Protoplast isolation, transfection, and gene editing for soybean (Glycine max ). Methods in Molecular Biology, Vol.2464, Pages 173–186. https://doi.org/10.1007/978-1-0716-2164-6_13

Pérez-Zavala, F. G., Atriztán-Hernández, K., Martínez-Irastorza, P., Oropeza-Aburto, A., López-Arredondo, D., Herrera-Estrella, L. (2022). Titanium nanoparticles activate a transcriptional response in Arabidopsis that enhances tolerance to low phosphate, osmotic stress and pathogen infection. Frontiers in Plant Science, Vol.13. https://doi.org/10.3389/fpls.2022.994523

Rahman, M. M., Mostofa, M. G., Das, A. K., Anik, T. R., Keya, S. S., Ahsan, S. M., Khan, M. A. R., Ahmed, M., Rahman, M. A., Hossain, M. M., Tran, L.-S. P. (2022). Ethanol positively modulates photosynthetic traits, antioxidant defense and osmoprotectant levels to enhance drought acclimatization in soybean. Antioxidants, Vol.11. https://doi.org/10.3390/antiox11030516

Rana, N., Kumawat, S., Kumar, V., Bansal, R., Mandlik, R., Dhiman, P., Patil, G. B., Deshmukh, R., Sharma, T. R., Sonah, H. (2022). Deciphering haplotypic variation and gene expression dynamics associated with nutritional and cooking quality in rice. Cells, Vol.11. https://doi.org/10.3390/cells11071144

Sulieman, S., Abdelrahman, M., Tran, L.-S. P.(2022). Carbon metabolic adjustment in soybean nodules in response to phosphate limitation: A metabolite perspective. Environmental and Experimental Botany, Vol.196. https://doi.org/10.1016/J.ENVEXPBOT.2022.104810

Sun, H., Li, W., Burritt, D. J., Tian, H., Zhang, H., Liang, X., Miao, Y., Mostofa, M. G., Tran, L.-S. P. (2022). Strigolactones interact with other phytohormones to modulate plant root growth and development. The Crop Journal, Vol. 10, Pages 1517–1527. https://doi.org/10.1016/J.CJ.2022.07.014

Tian, H., Watanabe, Y., Huu Nguyen, K., Duy Tran, C., Abdelrahman, M., Liang, X., Xu, K., Sepulveda, C., Golam Mostofa, M., van Ha, C., Nelson, D. C., Mochida, K., Tian, C., Tanaka, M., Seki, M., Miao, Y., Tran, L.-S. P., Li, W., Khn, X. (2022). KARRIKIN UPREGULATED F-BOX 1 negatively regulates drought tolerance in Arabidopsis. Plant Physiology, Vol.190, Pages, 2671–2687. https://doi.org/10.1093/PLPHYS/KIAC336

Tian, L., Chang, J., Shi, S., Ji, L., Zhang, J., Sun, Y., Li, X., Li, X., Xie, H., Cai, Y., Chen, D., Wang, J., van Veen, J. A., Kuramae, E. E., Tran, L.-S. P., Tian, C. (2022). Comparison of methane metabolism in the rhizomicrobiomes of wild and related cultivated rice accessions reveals a strong impact of crop domestication. Science of The Total Environment, Vol. 803. https://doi.org/10.1016/J.SCITOTENV.2021.150131

Tripathi D.K., Yadav S.R., Mochida K., Tran, L.-S. (2022). Plant Growth Regulators: True Managers of Plant Life. Plant and Cell Physiology, Volume 63, Issue 12, Pages 1757–1760, https://doi.org/10.1093/pcp/pcac170

Wang, F., Liu, S., Liu, H., Liu, Y., Yu, L., Wang, Q., Dong, Y., Tran, L.-S. P., Su, J., Zhao, W. (2022). Scenarios and sustainability of the economy–nitrogen-resource–environment system using a system dynamic model on the Qinghai-Tibet plateau. Journal of Environmental Management, Vol. 318. https://doi.org/10.1016/J.JENVMAN.2022.115623

Wang, Q., Liu, S., Wang, F., Liu, H., Liu, Y., Yu, L., Sun, J., Tran, L.-S. P., Dong, Y. (2022). Quantifying carbon sequestration service flow associated with human activities based on network model on the Qinghai-Tibetan plateau. Frontiers in Environmental Science, Vol.10. https://doi.org/10.3389/fenvs.2022.900908

Yang, Y., Fang, X., Chen, M., Wang, L., Xia, J., Wang, Z., Fang, J., Tran, L.-S. P., Shangguan, L. (2022). Copper stress in grapevine: Consequences, responses, and a novel mitigation strategy using 5-aminolevulinic acid. Environmental Pollution, Vol.307. https://doi.org/10.1016/J.ENVPOL.2022.119561

Yu, L., Liu, S., Wang, F., Liu, Y., Li, M., Wang, Q., Dong, S., Zhao, W.,Tran, L.-S. P., Sun, Y., Li, W., Dong, Y., Beazley, R., Qian, H. (2022). Effects of agricultural activities on energy-carbon-water nexus of the Qinghai-Tibet Plateau. Journal of Cleaner Production, Vol.331. https://doi.org/10.1016/J.JCLEPRO.2021.129995

Yu, L., Liu, S., Wang, F., Liu, Y., Liu, H., Wang, Q., Tran, L.-S. P., Dong, Y., Li, W. (2022). Strategies for agricultural production management based on land, water and carbon footprints on the Qinghai-Tibet Plateau. Journal of Cleaner Production, Vol.362. https://doi.org/10.1016/J.JCLEPRO.2022.132563

Zhang, Y., Tateishi-Karimata, H., Endoh, T., Jin, Q., Li, K., Fan, X., Ma, Y., Gao, L., Lu, H., Wang, Z., Cho, A. E., Yao, X., Liu, C., Sugimoto, N., Guo, S., Fu, X., Shen, Q., Xu, G., Herrera-Estrella, L. R., Fan, X. (2022). High-temperature adaptation of an OsNRT2.3 allele is thermoregulated by small RNAs. Science Advances, Vol. 8. https://doi.org/10.1126/SCIADV.ADC9785

2021

Abdelrahman, M., Nishiyama, R., Tran, C. D., Kusano, M., Nakabayashi, R., Okazaki, Y., Matsuda, F., Chávez Montes, R. A., Mostofa, M. G., Li, W., Watanabe, Y., Fukushima, A., Tanaka, M., Seki, M., Saito, K., Herrera-Estrella, L., Tran, L.-S. P. (2021). Defective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, Vol.118. https://doi.org/10.1073/pnas.2105021118

Barragán-Rosillo, A. C., Peralta-Alvarez, C. A., Ojeda-Rivera, J. O., Arzate-Mejía, R. G., Recillas-Targa, F., Herrera-Estrella, L. (2021). Genome accessibility dynamics in response to phosphate limitation is controlled by the PHR1 family of transcription factors in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, Vol.118. https://doi.org/10.1073/pnas.2107558118

Cervantes-Pérez, S. A., Yong-Villalobos, L., Florez-Zapata, N. M. V., Oropeza-Aburto, A., Rico-Reséndiz, F., Amasende-Morales, I., Lan, T., Martínez, O., Vielle-Calzada, J. P., Albert, V. A., Herrera-Estrella, L. (2021). Atypical DNA methylation, sRNA-size distribution, and female gametogenesis in Utricularia gibba. Scientific Reports, Vol.11, Pages 1–14. https://doi.org/10.1038/s41598-021-95054-y

Echeverria, A., Larrainzar, E., Li, W., Watanabe, Y., Sato, M., Tran, C. D., Moler, J. A., Hirai, M. Y., Sawada, Y., Tran, L.-S. P., Gonzalez, E. M. (2021). Medicago sativa and Medicago truncatula show contrasting root metabolic responses to drought. Frontiers in Plant Science, Vol. 12. https://doi.org/10.3389/fpls.2021.652143

Gomez-Zepeda, D., Frausto, M., Nájera-González, H. R., Herrera-Estrella, L., Ordaz-Ortiz, J. J. (2021). Mass spectrometry-based quantification and spatial localization of small organic acid exudates in plant roots under phosphorus deficiency and aluminum toxicity. The Plant Journal, Vol.106,  Pages 1791–1806. https://doi.org/10.1111/TPJ.15261

Hoang, X. L. T., Prerostova, S., Thu, N. B. A., Thao, N. P., Vankova, R., Tran, L.-S. P. (2021). Histidine Kinases: Diverse functions in plant development and responses to environmental conditions. Annual Review of Plant Biology, Vol. 72, Pages 297–323. https://doi.org/10.1146/ANNUREV-ARPLANT-080720-093057

Hosseini, M. S., Samsampour, D., Zahedi, S. M., Zamanian, K., Rahman, M. M., Mostofa, M. G., Tran, L.-S. P. (2021). Melatonin alleviates drought impact on growth and essential oil yield of lemon verbena by enhancing antioxidant responses, mineral balance, and abscisic acid content. Physiologia Plantarum, Vol.172, Pages 1363–1375. https://doi.org/10.1111/PPL.13335

Kumari, P., Singh, S., Yadav, S., Tran, L.-S. P. (2021). Influence of different types of explants in chickpea regeneration using thidiazuron seed-priming. Journal of Plant Research, Vol.134, Pages 1149–1154. https://doi.org/10.1007/s10265-021-01312-5

Liu, S., Sun, Y., Wu, X., Li, W., Liu, Y., Tran, L.-S. P. (2021). Driving factor analysis of ecosystem service balance for watershed management in the Lancang River Valley, Southwest China. Land, Vol. 10, Page 522. https://doi.org/10.3390/LAND10050522

Moguel, B., Pérez, L., Alcaraz, L. D., Blaz, J., Caballero, M., Muñoz-Velasco, I., Becerra, A., Laclette, J. P., Ortega-Guerrero, B., Romero-Oliva, C. S., Herrera-Estrella, L., Lozano-García, S. (2021). Holocene life and microbiome profiling in ancient tropical Lake Chalco, Mexico. Scientific Reports, Vol. 11. https://doi.org/10.1038/s41598-021-92981-8

Mostofa, M. G., Rahman, M. M., Ansary, M. M. U., Keya, S. S., Abdelrahman, M., Miah, M. G., Tran, L.-S. P. (2021). Silicon in mitigation of abiotic stress-induced oxidative damage in plants. Plant Physiology and Biochemistry, Vol.165, Pages 200-206.. https://doi.org/10.1080/07388551.2021.1892582

Mostofa, M. G., Rahman, M. M., Nguyen, K. H., Li, W., Watanabe, Y., Tran, C. D., Zhang, M., Itouga, M., Fujita, M., Tran, L.-S. P. (2021). Strigolactones regulate arsenate uptake, vacuolar-sequestration and antioxidant defense responses to resist arsenic toxicity in rice roots. Journal of Hazardous Materials, Vol.415. https://doi.org/10.1016/J.JHAZMAT.2021.125589

Nitnaware, K. M., Raskar, K. B., Agarwal, G., Chávez Montes, R. A., Chopra, R., López-Arredondo, D. L., Nikam, T. D., Patil, G. B. (2021). Whole-genome characterization and comparative genomics of a novel freshwater cyanobacteria species: Pseudanabaena punensis. Molecular Phylogenetics and Evolution, Vol. 164. https://doi.org/10.1016/J.YMPEV.2021.107272

Saha, G., Mostofa, M. G., Rahman, M. M., Tran, L.-S. P. (2021). Silicon-mediated heat tolerance in higher plants: A mechanistic outlook. Plant Physiology and Biochemistry, Vol.166, Pages 341–347. https://doi.org/10.1016/J.PLAPHY.2021.05.051

Salahvarzi, M., Nasr Esfahani, M., Shirzadi, N., Burritt, D. J., Tran, L.-S. P. (2021). Genotype- and tissue-specific physiological and biochemical changes of two chickpea (Cicer arietinum) varieties following a rapid dehydration. Physiologia Plantarum, Vol.172, Pages 1822–1834. https://doi.org/10.1111/PPL.13452

Siddiqui, M. N., Mostofa, M. G., Rahman, M. M., Tahjib-Ul-Arif, M., Das, A. K., Mohi-Ud-Din, M., Rohman, M. M., Hafiz, H. R., Ansary, M. M. U., Tran, L.-S. P. (2021). Glutathione improves rice tolerance to submergence: insights into its physiological and biochemical mechanisms. Journal of Biotechnology, Vol.325, Pages 109–118. https://doi.org/10.1016/J.JBIOTEC.2020.11.011

Sun, Y., Tian, L., Chang, J., Shi, S., Zhang, J., Xie, H., Cai, Y., Chen, D., Kuramae, E. E., van Veen, J. A., Li, W., Tran, L.-S. P., Tian, C. (2021). Rice domestication influences the composition and function of the rhizosphere bacterial chemotaxis systems. Plant and Soil, Vol.466, Pages 81–99. https://doi.org/10.1007/s11104-021-05036-2

Thakral, V., Bhat, J. A., Kumar, N., Myaka, B., Sudhakaran, S., Patil, G., Sonah, H., Shivaraj, S. M., Deshmukh, R. (2021). Role of silicon under contrasting biotic and abiotic stress conditions provides benefits for climate smart cropping. Environmental and Experimental Botany, Vol.189. https://doi.org/10.1016/J.ENVEXPBOT.2021.104545

Tian, L., Wang, E., Lin, X., Ji, L., Chang, J., Chen, H., Wang, J., Chen, D., Tran, L.-S. P., Tian, C. (2021). Wild rice harbors more root endophytic fungi than cultivated rice in the F1 offspring after crossbreeding. BMC Genomics, Vol.22. https://doi.org/10.1186/s12864-021-07587-1

Usovsky, M., Lakhssassi, N., Patil, G. B., Vuong, T. D., Piya, S., Hewezi, T., Robbins, R. T., Stupar, R. M., Meksem, K., Nguyen, H. T. (2021). Dissecting nematode resistance regions in soybean revealed pleiotropic effect of soybean cyst and reniform nematode resistance genes. The Plant Genome,Vol. 14. https://doi.org/10.1002/TPG2.20083

Usovsky, M., Ye, H., Vuong, T. D., Patil, G. B., Wan, J., Zhou, L., Nguyen, H. T. (2021). Fine-mapping and characterization of qSCN18, a novel QTL controlling soybean cyst nematode resistance in PI 567516C. Theoretical and Applied Genetics, Vol.134, Pages 621–631. https://doi.org/10.1007/s00122-020-03718-6

Valliyodan, B., Brown, A. v., Wang, J., Patil, G., Liu, Y., Otyama, P. I., Nelson, R. T., Vuong, T., Song, Q., Musket, T. A., Wagner, R., Marri, P., Reddy, S., Sessions, A., Wu, X., Grant, D., Bayer, P. E., Roorkiwal, M., Varshney, R. K., Nguyen, H. T. (2021). Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data Vol.8. https://doi.org/10.1038/s41597-021-00834-w

Vuong, T. D., Sonah, H., Patil, G., Meinhardt, C., Usovsky, M., Kim, K. S., Belzile, F., Li, Z., Robbins, R., Shannon, J. G., Nguyen, H. T. (2021). Identification of genomic loci conferring broad-spectrum resistance to multiple nematode species in exotic soybean accession PI 567305. Theoretical and Applied Genetics. 134(10), 3379–3395. https://doi.org/10.1007/s00122-021-03903-1

Wang L., Lu Z., Regulski M., Jiao Y., Chen J., Ware D., Xin Z. (2021). BSAseq: an interactive and integrated web-based workflow for identification of causal mutations in bulked F2 populations.  Bioinformatics, Volume 37, Issue 3, Pages 382–387. https://doi.org/10.1093/bioinformatics/btaa709

Younes, N. A., Rahman, M. M., Wardany, A. A., Dawood, M. F. A., Mostofa, M. G., Keya, S. S., Latef, A. A. H. A., Tran, L.-S. P. (2021). Antioxidants and Bioactive Compounds in Licorice Root Extract Potentially Contribute to Improving Growth, Bulb Quality and Yield of Onion (Allium cepa). Molecules 2021, Vol. 26, Page 2633. https://doi.org/10.3390/MOLECULES26092633

Zhang, S., Guo, Y., Zhang, Y., Guo, J., Li, K., Fu, W., Jia, Z., Li, W., Tran, L.-S. P., Jia, K. P., Miao, Y. (2021). Genome-wide identification, characterization and expression profiles of the CCD gene family in Gossypium species. 3 Biotech,  Vol.11. https://doi.org/10.1007/s13205-021-02805-9

2020

Agarwal, G., Kudapa, H., Ramalingam, A., Choudhary, D., Sinha, P., Garg, V., Singh, V. K., Patil, G. B., Pandey, M. K., Nguyen, H. T., Guo, B., Sunkar, R., Niederhuth, C. E., Varshney, R. K. (2020). Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement. Functional and Integrative Genomics, Vol.20, Pages 739–761. https://doi.org/10.1007/s10142-020-00756-7

Alejo-Jacuinde, G., González-Morales, S. I., Oropeza-Aburto, A., Simpson, J., Herrera-Estrella, L. (2020). Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species. BMC Plant Biology, Vol.20. https://doi.org/10.1186/s12870-020-02638-3

Aragón-Raygoza, A., Vasco, A., Blilou, I., Herrera-Estrella, L., Cruz-Ramírez, A. (2020). Development and cell cycle activity of the root apical meristem in the fern Ceratopteris richardii. Genes 2020, Vol. 11, Page 1455. https://doi.org/10.3390/GENES11121455

Benedetti, M., Barera, S., Longoni, P., Guardini, Z., Herrero Garcia, N., Bolzonella, D., Lopez-Arredondo, D., Herrera-Estrella, L., Goldschmidt-Clermont, M., Bassi, R., Dall’Osto, L. (2020). A microalgal-based preparation with synergistic cellulolytic and detoxifying action towards chemical-treated lignocellulose. Plant Biotechnology Journal, Vol.19, Page 124–137. https://doi.org/10.1111/PBI.13447

Carreras-Villasenõr, N., Rico-Ruiz, J. G., Chávez Montes, R. A., Yong-Villalobos, L., López-Hernández, J. F., Martínez-Hernández, P., Herrera-Estrella, L., Herrera-Estrella, A., López-Arredondo, D. (2020). Assessment of the ptxD gene as a growth and selective marker in Trichoderma atroviride using Pccg6, a novel constitutive promoter. Microbial Cell Factories, Vol.19. https://doi.org/10.1186/s12934-020-01326-z

Chen, L., Yang, H., Fang, Y., Guo, W., Chen, H., Zhang, X., Dai, W., Chen, S., Hao, Q., Yuan, S., Zhang, C., Huang, Y., Shan, Z., Yang, Z., Qiu, D., Liu, X., Tran, L. S. P., Zhou, X., Cao, D. (2020). Overexpression of GmMYB14 improves high-density yield and drought tolerance of soybean through regulating plant architecture mediated by the brassinosteroid pathway. Plant Biotechnology Journal, Vol.19, Pages 702–716. https://doi.org/10.1111/PBI.13496

Cutolo, E., Tosoni, M., Barera, S., Herrera-Estrella, L., Dall’Osto, L., Bassi, R. (2020). A phosphite dehydrogenase variant with promiscuous access to nicotinamide cofactor pools sustains fast phosphite-dependent growth of transplastomic Chlamydomonas reinhardtii. Plants 2020, Vol. 9, Page 473. https://doi.org/10.3390/PLANTS9040473

Deshmukh, R., Rana, N., Liu, Y., Zeng, S., Agarwal, G., Sonah, H., Varshney, R., Joshi, T., Patil, G. B., Nguyen, H. T. (2020). Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes. Physiologia Plantarum, Vol.171, Pages 756–770. https://doi.org/10.1111/PPL.13287

Gong, Z., Xiong, L., Shi, H., Yang, S., Herrera-Estrella, L. R., Xu, G., Chao, D. Y., Li, J., Wang, P. Y., Qin, F., Li, J., Ding, Y., Shi, Y., Wang, Y., Yang, Y., Guo, Y., Zhu, J. K. (2020). Plant abiotic stress response and nutrient use efficiency. Science China Life Sciences, Vol. 63, Pages 635–674. https://doi.org/10.1007/S11427-020-1683-X

González-Morales, S. I., Pacheco-Gutiérrez, N. B., Ramírez-Rodríguez, C. A., Brito-Bello, A. A., Estrella-Hernández, P., Herrera-Estrella, L., López-Arredondo, D. L. (2020). Metabolic engineering of phosphite metabolism in Synechococcus elongatus PCC 7942 as an effective measure to control biological contaminants in outdoor raceway ponds. Biotechnology for Biofuels, Vol.13. https://doi.org/10.1186/s13068-020-01759-z

Graham, N., Patil, G. B., Bubeck, D. M., Dobert, R. C., Glenn, K. C., Gutsche, A. T., Kumar, S., Lindbo, J. A., Maas, L., May, G. D., Vega-Sanchez, M. E., Stupar, R. M., Morrell, P. L. (2020). Plant genome editing and the eelevance of off-target changes. Plant Physiology, Vol.183, Pages 1453–1471. https://doi.org/10.1104/PP.19.01194

Guo, W., Chen, L., Herrera-Estrella, L., Cao, D., Tran, L.-S. P. (2020). Altering plant architecture to improve performance and resistance. Trends in Plant Science, Vol.25,  Pages 1154–1170. https://doi.org/10.1016/J.TPLANTS.2020.05.009

Kumar, N., Kumawat, S., Khatri, P., Singla, P., Tandon, G., Bhatt, V., Shinde, S., Patil, G. B., Sonah, H., Deshmukh, R. (2020). Understanding aquaporin transport system in highly stress-tolerant and medicinal plant species Jujube (Ziziphus jujuba Mill.). Journal of Biotechnology, Vol.324, Pages 103–111. https://doi.org/10.1016/J.JBIOTEC.2020.09.026

Lakhssassi, N., Zhou, Z., Liu, S., Piya, S., Cullen, M. A., el Baze, A., Knizia, D., Patil, G. B., Badad, O., Embaby, M. G., Meksem, J., Lakhssassi, A., Abughazaleh, A., Hewezi, T., Meksem, K. (2020). Soybean TILLING-by-Sequencing+ reveals the role of novel GmSACPD members in unsaturated fatty acid biosynthesis while maintaining healthy nodules. Journal of Experimental Botany, Vol.71, Pages 6969–6987. https://doi.org/10.1093/JXB/ERAA402

Nasr Esfahani, M., Inoue, K., Nguyen, K. H., Chu, H. D., Watanabe, Y., Kanatani, A., Burritt, D. J., Mochida, K., Tran, L.-S. P. (2020). Phosphate or nitrate imbalance induces stronger molecular responses than combined nutrient deprivation in roots and leaves of chickpea plants. Plant, Cell & Environment, Vol.44, Pages 574–597. https://doi.org/10.1111/PCE.13935

Ojeda-Rivera, J. O., Oropeza-Aburto, A., Herrera-Estrella, L. (2020). Dissection of root transcriptional responses to low pH, aluminum toxicity and iron excess under Pi-limiting conditions in Arabidopsis wild-type and stop1 seedlings. Frontiers in Plant Science, Vol.11. https://doi.org/10.3389/fpls.2020.01200

Oropeza-Aburto, A., Cervantes-Pérez, S. A., Albert, V. A., Herrera-Estrella, L. (2020). Agrobacterium tumefaciens mediated transformation of the aquatic carnivorous plant Utricularia gibba. Plant Methods, Vol.16. https://doi.org/10.1186/s13007-020-00592-7

Patel, M. K., Kumar, M., Li, W., Luo, Y., Burritt, D. J., Alkan, N., Tran, L.-S. P. (2020). Enhancing salt tolerance of plants: From metabolic reprogramming to exogenous chemical treatments and molecular approaches. Cells 2020, Vol. 9, Page 2492. https://doi.org/10.3390/CELLS9112492

Rico-Reséndiz, F., Cervantes-Pérez, S. A., Espinal-Centeno, A., Dipp-Álvarez, M., Oropeza-Aburto, A., Hurtado-Bautista, E., Cruz-Hernández, A., Bowman, J. L., Ishizaki, K., Arteaga-Vázquez, M. A., Herrera-Estrella, L., Cruz-Ramírez, A. (2020). Transcriptional and morpho-physiological responses of Marchantia polymorpha upon phosphate starvation. International Journal of Molecular Sciences 2020, Vol. 21, Page 8354. https://doi.org/10.3390/IJMS21218354

Ruiz-Aguilar, B., Raya-González, J., López-Bucio, J. S., Reyes de la Cruz, H., Herrera-Estrella, L., Ruiz-Herrera, L. F., Martínez-Trujillo, M., López-Bucio, J. (2020). Mutation of MEDIATOR 18 and chromate trigger twinning of the primary root meristem in Arabidopsis. Plant, Cell & Environment, Vol.43, Pages 1989–1999. https://doi.org/10.1111/PCE.13786

Wang, S., Chen, A., Xie, K., Yang, X., Luo, Z., Chen, J., Zeng, D., Ren, Y., Yang, C., Wang, L., Feng, H., López-Arredondo, D. L., Herrera-Estrella, L. R., Xu, G. (2020). Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants. Proceedings of the National Academy of Sciences of the United States of America, Vol.117, Pages 16649–16659. https://doi.org/10.1073/pnas.2000926117

2019

Rendón-Anaya, M., Ibarra-Laclette, E., Méndez-Bravo, A., Lan, T., Zheng, C., Carretero-Paulet, L., Perez-Torres, C. A., Chacón-López, A., Hernandez-Guzmán, G., Chang, T. H., Farr, K. M., Brad Barbazuk, W., Chamala, S., Mutwil, M., Shivhare, D., Alvarez-Ponce, D., Mitter, N., Hayward, A., Fletcher, S., … Herrera-Estrella, L. (2019). The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation. Proceedings of the National Academy of Sciences of the United States of America, Vol.116, Pages 17081–17089. https://www.pnas.org/doi/10.1073/pnas.1822129116

Science Outreach

Herrera-Estrella, L. (2020). My journey into the birth of plant transgenesis and its impact on modern plant biology. Plant Biotechnology Journal, Vol.18, Pages1487–1491. https://doi.org/10.1111/PBI.13319