Texas Tech University

IGCAST Publications

 
 
Texas Tech, Nanjing Agricultural University Research Teams Make Plant Nutrient Delivery BreakthroughHerrera-Estrella named National Academy of Inventors Fellow 2019

 

 

 

Articles under review

Luis Herrera-Estrella. Improved chromosome genome assembly, structural variation insight, and annotation of Gossypium barbadense L. 'Pima-S6'.https://doi.org/10.21203/rs.3.rs-1694008/v1

Rui Wu, Zhixin Liu, Jiajing Wang, Weiqiang Li, Aizhi Qin, Xiaole Yu, Hao Liu, Chenxi Guo, Zihao Zhao, Yixin Zhang, Yaping Zhou, Susu Sun, Yumeng Liu, Mengke Hu, Jincheng Yang, Masood Jan, George Bawa,  Jean-David Rochaix, Guoyong An,  Luis Herrera-Estrella, Lam-Son Phan Tran, Xuwu Sun. Identification of two bZIP transcription factors that regulate development of pavement and trichome cells in Arabidopsis thaliana by single-cell RNA-sequencing. https://doi.org/10.1101/2022.04.12.488054

Liu, Zihao Zhao, Mengke Hu, Yixin Zhang, Susu Sun, Luis Herrera-Estrella, Lam-Son Phan Tran, Xuwu Sun, Fuguang Li (2022). Dissection of a Cell Atlas of Developing Somatic Embryos in Cotton by Single-cell RNA-sequencing and Spatial Transcriptomic and Metabolomic Analyses. https://doi.org/10.21203/rs.3.rs-2100867/v1

 

 

 

Refereed Journals

2022

Jinlei Han, Damar Lopez-Arredondo, Guangrun Yu, Yankun Wang, Baohua Wanga, Sarah Brooke Wall, Xin Zhang, Hui Fang, Alfonso Carlos Barragan-Rosillo, Xiaoping Pan, Yanqin Jiang, Jingbo Chen, Hui Zhang, Bao-Liang Zhou, Luis Herrera-Estrella, Baohong Zhang, Kai Wang (2022). Genome-wide chromatin accessibility analysis unveils openchromatin convergent evolution during polyploidizationin cotton. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 119 (44) e2209743119. DOI: https://doi.org/10.1073/pnas.2209743119

Chien Van Ha, Mohammad Golam Mostofa, Kien Huu Nguyen, Cuong Duy Tran, Yasuko Watanabe, Weiqiang Li, Yuriko Osakabe, Mayuko Sato, Kiminori Toyooka, Maho Tanaka, Motoaki Seki, David J. Burritt, Cheyenne Marie Anderson, Ru Zhang, Huong Mai Nguyen, Vy Phuong Le, Hien Thuy Bui, Keiichi Mochida, Lam-Son Phan Tran (2022). The histidine phosphotransfer AHP4 plays a negative role in Arabidopsis plant response to drought. The Plant journal Volume111, Issue6, 1732-1752. DOI: https://doi.org/10.1111/tpj.15920

Md. Shahadat Hossain, Mostafa Abdelrahman, Cuong Duy Tran, Kien Huu Nguyen, Ha Duc Chu, Yasuko Watanabe, Masayuki Fujita, Lam-Son Phan Tran (2022). Modulation of osmoprotection and antioxidant defense by exogenously applied acetate enhances cadmium stress tolerance in lentil seedlings. Environmental Pollution, Volume 308, 1 119687. DOI: https://doi.org/10.1016/j.envpol.2022.119687

Fangfang Wang, Shiliang Liu, Hua Liu, Yixuan Liu, Lu Yu, Qingbo Wang, Yuhong Dong, Lam-Son Phan Tran, Jian Sun, Wenwu Zhao (2022). Scenarios and sustainability of the economy–nitrogen-resource–environment system using a system dynamic model on the Qinghai-Tibet Plateau. Journal of Environmental Management, Volume 318, 115623. DOI: https://doi.org/10.1016/j.jenvman.2022.115623

Mohammad Golam Mostofa, Md. Mezanur Rahmana, Totan Kumar Ghosh, Ahmad Humayan Kabir, Mostafa Abdelrahman, Md. Arifur Rahman Khan, Keiichi Mochida, Lam-Son Phan Tran (2022). Potassium in plant physiological adaptation to abiotic stresses. Plant Physiology and Biochemistry, Volume 186, 279-289. DOI: https://doi.org/10.1016/j.plaphy.2022.07.011

Yuxian Yanga, Xiang Fanga, Mengxia Chen, Lingyu Wang, Jiaxin Xia, Zicheng Wang, Jinggui Fang Lam-Son Phan Tran, Lingfei Shangguan (2022). Copper stress in grapevine: Consequences, responses, and a novel mitigation strategy using 5-aminolevulinic acid. Environmental Pollution, Volume 307, 119561. DOI: https://doi.org/10.1016/j.envpol.2022.119561

Lu Yu, Shiliang Liu, Fangfang Wang, Yixuan Liu, Hua Liu, Qingbo Wang, Lam-Son Phan Tran, Yuhong Dong Weiqiang Li (2022). Strategies for agricultural production management based on land, water and carbon footprints on the Qinghai-Tibet Plateau. Journal of Cleaner Production, Volume 362, 132563. DOI: https://doi.org/10.1016/j.jclepro.2022.132563

Mohammad Golam Mostofa, Mostafa Abdelrahman, Md. Mezanur Rahman, Cuong Duy Tran, Kien Huu Nguyen, Yasuko Watanabe, Misao Itouga, Weiqiang Li, Zhe Wang, Keiichi Mochida, Lam-Son Phan Tran (2022). Karrikin Receptor KAI2 Coordinates Salt Tolerance Mechanisms in Arabidopsis thaliana. Plant and Cell Physiology, pcac121, DOI: https://doi.org/10.1093/pcp/pcac121

Huwei Sun, Weiqiang Li, David J.Burritt, Hongtao Tian, Heng Zhang, Xiaohan Liang, Yuchen Miao, Mohammad Golam Mostofa, Lam-Son Phan Tran (2022). Strigolactones interact with other phytohormones to modulate plant root growth and development. The Crop Journal. DOI: https://doi.org/10.1016/j.cj.2022.07.014

Elohim Bello-Bello, Damar López-Arredondo, Thelma Y. Rico-Chambrón, Luis Herrera-Estrella (2022). Conquering compacted soils: uncovering the molecular components of root soil penetration. Trends in Plants Science Volume 27, Issue 8, 814-827. DOI: https://doi.org/10.1016/j.tplants.2022.04.001

Aragón-Raygoza A, Herrera-Estrella L and Cruz-Ramírez A (2022). Transcriptional analysis of Ceratopteris richardii young sporophyte reveals conservation of stem cell factors in the root apical meristem. Front. Plant Sci. 13:924660. DOI: 10.3389/fpls.2022.924660.https://doi.org/10.3389/fpls.2022.924660

Elohim Bello Bello, Thelma Y Rico Cambron, Lesly Abril Ortiz Ramírez, Rubén Rellán Álvarez, Luis Herrera-Estrella (2022). Root Penetration Index 3, a major quantitative trait locus associated with root system penetrability in Arabidopsis. Journal of Experimental Botany, Volume 73, Issue 14, 11 , 4716–4732. DOI: 10.1093/jxb/erac188. DOI: https://doi.org/10.1093/jxb/erac188

Sanjida Sultana Keya, Mohammad Golam Mostofa, Md.Mezanur Rahmana, Ashim Kumar Das, Md. Abiar Rahman, Touhidur Rahman Anik, Sharmin Sultana, Md. Arifur Rahman Khan, Md. Robyul Islam, Yasuko Watanabe, Keiichi Mochida, Lam-Son Phan Tran (2022). Effects of glutathione on waterlogging-induced damage in sesame crop. Industrial Crops and Products, Volume 185, 115092. DOI: https://doi.org/10.1016/j.indcrop.2022.115092

Maryam Nasr Esfahani,Miyako Kusano,Mostafa Abdelrahman,Kien Huu Nguyen,Yasuko Watanabe,Keiichi Mochida,David J. Burritt,Lam-Son Phan Tran (2022). Differential metabolic rearrangements in the roots and leaves of Cicer arietinum caused by single or double nitrate and/or phosphate deficiencies.  The Plant journal Volume111, Issue6, 1643-1659. DOI:https://doi.org/10.1111/tpj.15913

Mostafa Abdelrahman, Mohammad Golam Mostofa, Cuong Duy Tran, Magdi El-sayed, Weiqiang Li, Saad Sulieman, Maho Tanaka, Motoaki Seki, Lam-Son Phan Tran (2022). The Karrikin Receptor Karrikin Insensitive2 Positively Regulates Heat Stress Tolerance in Arabidopsis thaliana. Plant and Cell Physiology, pcac112. DOI: https://doi.org/10.1093/pcp/pcac112

Hongtao Tian, Yasuko Watanabe, Kien Huu Nguyen, Cuong Duy Tran, Mostafa Abdelrahman, Xiaohan Liang, Kun Xu, Claudia Sepulveda, Mohammad Golam Mostofa, Chien Van Ha, David C Nelson, Keiichi Mochida, Chunjie Tian, Maho Tanaka, Motoaki Seki, Yuchen Miao, Lam-Son Phan Tran, Weiqiang Li (2022). KARRIKIN UPREGULATED F-BOX 1 negatively regulates drought tolerance in Arabidopsis. Plant Physiology, kiac336. DOI: https://doi.org/10.1093/plphys/kiac336

Wang Q, Liu S, Wang F, Liu H, Liu Y, Yu L, Sun J, Tran L-SP, Dong Y (2022). Quantifying Carbon Sequestration Service Flow Associated with Human Activities Based on Network Model on the Qinghai-Tibetan Plateau. Front. Environ. Sci. 10:900908. DOI: https://doi.org/10.3389/fenvs.2022.900908

Zhonghui Feng, Xiaohan Liang, Hongtao Tian, Yasuko Watanabe, Kien Huu Nguyen, Cuong Duy Tran, Mostafa Abdelrahman, Kun Xu, Mohammad Golam Mostofa, Chien Van Ha, Keiichi Mochida, Chunjie Tian, Maho Tanaka, Motoaki Seki, Zhengwei Liang, Yuchen Miao, Lam-Son Phan Tran, Weiqiang Li (2022). SUPPRESSOR of MAX2 1 (SMAX1) and SMAX1-LIKE2 (SMXL2) Negatively Regulate Drought Resistance in Arabidopsis thaliana. Plant and Cell Physiology, pcac080. DOI:https://doi.org/10.1093/pcp/pcac080

Alolga, R.N.; Wang, F.; Zhang, X.; Li, J.; Tran, L.-S.P.; Yin, X (2022). Bioactive Compounds from the Zingiberaceae Family with Known Antioxidant Activities for Possible Therapeutic Uses. Antioxidants 2022, 11, 1281.DOI: https://doi.org/10.3390/antiox11071281

Tianying Lan, Kalle Leppälä, Crystal Tomlin, Sandra L. Talbot, George K. Sage, Sean D. Farley, Richard T. Shideler, Lutz Bachmann, Øystein Wiig, Victor A. Albert, Jarkko Salojärvi, Thomas Mailund, Daniela I. Drautz-Moses, Stephan C. Schuster, Luis Herrera-Estrella, Charlotte Lindqvist (2022). Insights into bear evolution from a Pleistocene polar bear genome. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 119 (24) e2200016119. DOI: https://doi.org/10.1073/pnas.2200016119

Nidhi Kandhol, Vijay Pratap Singh, Luis Herrera-Estrella, Lam-Son Phan Tran, Durgesh Kumar Tripathi (2022). Arsenite: the umpire of arsenate perception and responses in plants. Trends in Plant Science. Volume 27, Issue 5, 420-422. DOI: https://doi.org/10.1016/j.tplants.2022.02.005

Weiqiang Li, Yaru Sun, Kun Li, Hongtao Tian, Jiangtao Jia, Hongyu Zhang, Yaping Wang, Hong Wang, Baodi Bi, Jinggong Guo, Lam-Son Phan Tran, Yuchen Miao (2022). Sinapate Esters Mediate UV-B-Induced Stomatal Closure by Regulating Nitric Oxide, Hydrogen Peroxide, and Malate Accumulation in Arabidopsis thaliana. Plant and Cell Physiology, pcac059. DOI: https://doi.org/10.1093/pcp/pcac059

Saad Suliemana, Mostafa Abdelrahman, Lam-Son Phan Tran (2022). Carbon metabolic adjustment in soybean nodules in response to phosphate limitation: A metabolite perspective. Environmental and Experimental Botany, Volume 196, 10481. DOI: https://doi.org/10.1016/j.envexpbot.2022.104810

Hong Viet La, Ha Duc Chu, Cuong Duy Tran, Kien Huu Nguyen, Quynh Thi Ngoc Le, Chinh Minh Hoang, Bang Phi Cao, Anh Tuyen Cong Pham, Bach Duc Nguyen, Trung Quoc Nguyen, Loc Van Nguyen, Chien Van Ha, Hien Thi Le, Ham Huy Le, Lam-Son Phan Tran (2022). Insights into the gene and protein structures of the CaSWEET family members in chickpea (Cicer arietinum), and their gene expression patterns in different organs under various stress and abscisic acid treatments. Gene, Volume 819, 146210. DOI: https://doi.org/10.1016/j.gene.2022.146210

Hopp HE, Spangenberg G and Herrera-Estrella L (2022). Editorial: Plant Transformation. Front. Plant Sci. 13:876671. DOI: https://doi.org/10.3389/fpls.2022.876671

Medina-Paz, F.; Herrera-Estrella, L.; Heil, M. (2022). All Set before Flowering: A 16S Gene Amplicon-Based Analysis of the Root Microbiome Recruited by Common Bean (Phaseolus vulgaris) in Its Centre of Domestication. Plants 2022, 11, 1631. DOI: https://doi.org/10.3390/plants11131631

Ojeda-Rivera JO, Ulloa M, Roberts PA, Kottapalli P, Wang C, Nájera-González H-R, Payton P, Lopez-Arredondo D and Herrera-Estrella L (2022). Root-Knot Nematode Resistance in Gossypium hirsutum Determined by a Constitutive Defense-Response Transcriptional Program Avoiding a Fitness Penalty. Front. Plant Sci. 13:858313. DOI: https://doi.org/10.3389/fpls.2022.858313

Alejo-Jacuinde, G.; Herrera-Estrella, L. (2022). Exploring the High Variability of Vegetative Desiccation Tolerance in Pteridophytes. Plants 2022, 11, 1222. DOI: https://doi.org/10.3390/plants11091222

Rahman, M.M.; Mostofa, M.G.; Das, A.K.; Anik, T.R.; Keya, S.S.; Ahsan, S.M.; Khan, M.A.R.; Ahmed, M.; Rahman, M.A.; Hossain, M.M.; Tran, L.-S. P. (2022). Ethanol Positively Modulates Photosynthetic Traits, Antioxidant Defense and Osmoprotectant Levels to Enhance Drought Acclimatization in Soybean. Antioxidants 2022, 11, 516. DOI: https://doi.org/10.3390/antiox11030516

Rana, N.; Kumawat, S.; Kumar, V.; Bansal, R.; Mandlik, R.; Dhiman, P.; Patil, G.B.; Deshmukh, R.; Sharma, T.R.; Sonah, H (2022). Deciphering Haplotypic Variation and Gene Expression Dynamics Associated with Nutritional and Cooking Quality in Rice. Cells 2022, 11, 1144. DOI: https://doi.org/10.3390/cells11071144

Patil, G.B., Stupar, R.M., Zhang, F. (2022). Protoplast Isolation, Transfection, and Gene Editing for Soybean (Glycine max). In: Wang, K., Zhang, F. (eds) Protoplast Technology. Methods in Molecular Biology, vol 2464. Humana, New York, NY. DOI: https://doi.org/10.1007/978-1-0716-2164-6_13

Gerardo Alejo-Jacuinde, Tania Kean-Galeno, Norma Martínez-Gallardo, J Daniel Tejero-Díez, Klaus Mehltreter, John P Délano-Frier, Melvin J Oliver, June Simpson, Luis Herrera-Estrella (2022). Viability markers for determination of desiccation tolerance and critical stages during dehydration in Selaginella species. Journal of Experimental Botany, Volume 73, Issue 12, 3898–3912. DOI: https://doi.org/10.1093/jxb/erac121

Das, A.K.; Anik, T.R.; Rahman, M.M.; Keya, S.S.; Islam, M.R.; Rahman, M.A.; Sultana, S.; Ghosh, P.K.; Khan, S.; Ahamed, T.; Ghosh, T.K.; Tran, L.S.-P.; Mostofa, M.G (2022). Ethanol Treatment Enhances Physiological and Biochemical Responses to Mitigate Saline Toxicity in Soybean. Plants 2022, 11, 272. DOI: https://doi.org/10.3390/plants11030272

Lei Tian, Jingjing Chang, Shaohua Shi, Li Ji, Jianfeng Zhang, Yu Sun, Xiaojie Li, Xiujun Li, Hongwei Xie, Yaohui Cai, Dazhou Chen, Jilin Wang, Johannes A. van Veen, Eiko E. Kuramae, Lam-Son Phan Tran, Chunjie Tian (2022). Comparison of methane metabolism in the rhizomicrobiomes of wild and related cultivated rice accessions reveals a strong impact of crop domestication. Science of The Total Environment, Volume 803, 150131. DOI: https://doi.org/10.1016/j.scitotenv.2021.150131

Lu Yu, Shiliang Liu, Fangfang Wang, Yixuan Liu, Mingqi Li Qingbo Wang, Shikui Dong, Wenwu Zhao, Lam-Son PhanTran, Yongxiu Sun, Weiqiang Li, Yuhong Dong, Robert Beazley, Haotian Qian (2022). Effects of agricultural activities on energy-carbon-water nexus of the Qinghai-Tibet Plateau. Journal of Cleaner Production, Volume 331, 2022, 129995. DOI: https://doi.org/10.1016/j.jclepro.2021.129995

Nicholas Gladman, Andrew Olson, Sharon Wei, Kapeel Chougule, Zhenyuan Lu, Marcela Tello-Ruiz, Ivar Meijs, Peter Van Buren, Yinping Jiao, Bo Wang, Vivek Kumar, Sunita Kumari, Lifang Zhang, John Burke, Junping Chen, Gloria Burow, Chad Hayes, Yves Emendack, Zhanguo Xin, Doreen Ware (2022). Sorghum Base: a web-based portal for sorghum genetic information and community advancement. Planta 255, 35 (2022). DOI: https://doi.org/10.1007/s00425-022-03821-6

Ricardo A. Chávez Montes, Anna Haber, Jeremy Pardo, Robyn F. Powell, Upendra K. Divisetty, Anderson T. Silva, Tania Hernández-Hernández, Vanildo Silveira, Haibao Tang, Eric Lyons, Luis Rafael Herrera Estrella, Robert VanBuren, Melvin J. Oliver (2022). A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species. Proceedings of the National Academy of Sciences of the United States of America (PNAS)119 (5): e2118886119. DOI: https://doi.org/10.1073/pnas.2118886119

 

2021

 

Thakral V, Bhat JA, Kumar N, Myaka B, Sudhakaran S, Patil G, Sonah H, Shivaraj SM, Deshmukh R (2021). Role of silicon under contrasting biotic and abiotic stress conditions provides benefits for climate smart cropping. Environmental and Experimental Botany. 9:104545. DOI:https://doi.org/10.1016/j.envexpbot.2021.104545

Nitnaware KM, Raskar KB, Agarwal G, Chávez Montes R, Chopra R, Arredondo DL, Nikam TD, Patil GB (2021). Whole-genome characterization and comparative genomics of a novel freshwater cyanobacteria species: Pseudanabaena punensis. Molecular Phylogenetics and Evolution. DOI: https://doi.org/10.1016/j.ympev.2021.107272

Sun Y, Tian L, Chang J, Shi S, Zhang J, Xie H, Cai Y, Chen D, Kuramae EE, van Veen JA, Li W, Tran LP, Tian C (2021). Rice domestication influences the composition and function of the rhizosphere bacterial chemotaxis systems. Plant Soil. DOI: https://doi.org/10.1007/s11104-021-05036-2

Vuong, T.D., Sonah, H., Patil, G, C. Meinhardt, M. Usovsky, K. S. Kim, F. Belzile, Z. Li, R. Robbins, J. G. Shannon, H. T. Nguyen (2021). Identification of genomic loci conferring broad-spectrum resistance to multiple nematode species in exotic soybean accession PI 567305. Theor Appl Genet 134, 3379–3395. DOI: https://doi.org/10.1007/s00122-021-03903-1

Kumari P, Singh S, Yadav S, Tran LP (2021). Influence of different types of explants in chickpea regeneration using thidiazuron seed-priming. J Plant Res. DOI: https://doi.org/10.1007/s10265-021-01312-5

Babu Valliyodan, Anne V. Brown, Juexin Wang, Gunvant Patil, Yang Liu, Paul I. Otyama, Rex T. Nelson, Tri Vuong, Qijian Song, Theresa A. Musket, Ruth Wagner, Pradeep Marri, Sam Reddy, Allen Sessions, Xiaolei Wu, David Grant, Philipp E. Bayer, Manish Roorkiwal, Rajeev K. Varshney, Xin Liu, David Edwards, Dong Xu, Trupti Joshi, Steven B. Cannon, Henry T. Nguyen (2021). Fine-mapping and characterization of qSCN18, a novel QTL controlling soybean cyst nematode resistance in PI 567516C. Theor Appl Genet 134, 621–631. DOI: https://doi.org/10.1007/s00122-020-03718-6

Salahvarzi M, Nasr Esfahani M, Shirzadi N, Burritt DJ, Tran LP (2021). Genotype- and tissue-specific physiological and biochemical changes of two chickpea (Cicer arietinum) varieties following a rapid dehydration. Physiol Plant 172:1822-34. DOI:https://doi.org/10.1111/ppl.13452

Liu S, Sun Y, Wu X, Li W, Liu Y, Tran LP (2021). Driving factor analysis of ecosystem services balance for watershed management in the Lancang River Valley, Southwest China Land. 10:522. DOI: https://doi.org/10.3390/land10050522

Zhang S, Guo Y, Zhang Y, Guo J, Li K, Fu W, Jia Z, Li W, Tran LP, Jia KP, Miao Y (2021). Genome-wide identification, characterization and expression profiles of the CCD gene family in Gossypium species. 3 Biotech 11:249. DOI: https://doi.org/10.1007/s13205-021-02805-9

Younes NA, Rahman MM, Wardany AA, Dawood MFA, Mostofa MG, Keya SS, Abdel Latef A, Tran LP (2021). Antioxidants and bioactive compounds in licorice root extract potentially contribute to improving growth, bulb quality and yield of onion (Allium cepa). Molecules 26:2633. DOI: https://doi.org/10.3390/molecules26092633

Tian L, Wang E, Lin X, Chang J, Chen H, Wang J, Chen D, Tran LP, Tian C (2021). Wild rice harbors more root endophytic fungi than cultivated rice in the F1 offspring after crossbreeding. BMC Genomics 22:278. DOI: https://doi.org/10.1186/s12864-021-07587-1

Echeverria A, Larrainzar E, Li W, Watanabe Y, Sato M, Tran CD, Moler JA, Hirai MY, Sawada Y, Tran LP, Gonzalez EM (2021). Medicago sativa and Medicago truncatula show contrasting root metabolic responses to drought. Front Plant Sci 12:652143. DOI: https://doi.org/10.3389/fpls.2021.652143

Saha G, Mostofa MG, Rahman MM, Tran LP (2021). Silicon-mediated heat tolerance in higher plants: A mechanistic outlook. Plant Physiol Biochem 166:341-7. DOI: https://doi.org/10.1016/j.plaphy.2021.05.051

Hoang XLT, Prerostova S, Thu NBA, Thao NP, Vankova R, Tran LP (2021). Histidine kinases: diverse functions in plant development and responses to environmental conditions. Annu Rev Plant Biol 72:297-323. DOI: https://doi.org/10.1146/annurev-arplant-080720-093057

Mostofa MG, Rahman MM, Nguyen KH, Li W, Watanabe Y, Tran CD, Zhang M, Itouga M, Fujita M, Tran LP (2021). Strigolactones regulate arsenate uptake, vacuolar-sequestration and antioxidant defense responses to resist arsenic toxicity in rice roots. J Hazard Mater 325:125589. DOI: https://doi.org/10.1016/j.jhazmat.2021.125589

Hosseini MS, Samsampour D, Zahedi SM, Zamanian K, Rahman M, Mostofa MG, Tran LP (2021). Melatonin alleviates drought impact on growth and essential oil yield of lemon verbena by enhancing antioxidant responses, mineral balance, and abscisic acid content. Physiol Plant. DOI: https://doi.org/10.1111/ppl.13335

Mostofa MG, Rahman MM, Ansary MMU, Keya SS, Abdelrahman M, Miah MG, Tran LP (2021). Silicon in mitigation of abiotic stress-induced oxidative damage in plants. Crit Rev Biotechnol. DOI: https://doi.org/10.1080/07388551.2021.1892582

Yin, H., Zhou, H., Wang, W., Tran, L.S.-P, Zhang B (2022). Evidence for miRNAs involved in the high-altitude responses of sainfoin (Onobrychis viciifolia) grown in the Qinghai-Tibetan plateau. J. Plant Biochem. Biotechnol. 31, 533–544. DOI: https://doi.org/10.1007/s13562-021-00702-z

Alfonso Carlos Barragán-Rosillo, Carlos Alberto Peralta-Alvarez, Jonathan Odilón Ojeda-Rivera, Rodrigo G. Arzate-Mejía, Félix Recillas-Targa, Luis Herrera-Estrella (2021). Genome accessibility dynamics in response to phosphate limitation is controlled by the PHR1 family of transcription factors in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 118(33): e2107558118. DOI:https://doi.org/10.1073/pnas.2107558118

Usovsky M, Lakhssassi N, Patil GB, Vuong TD, Piya S, Hewezi T, Robbins RT, Stupar RM, Meksem K, Nguyen HT (2021). Dissecting nematode resistance regions in soybean revealed pleiotropic effect of soybean cyst and reniform nematode resistance genes. The Plant Genome. 16:e20083. DOI: https://doi.org/10.1002/tpg2.20083

Mostafa Abdelrahman, Rie Nishiyama, Cuong Duy Tran, Miyako Kusano, Ryo Nakabayashi, Yozo Okazaki, Fumio Matsuda, Ricardo A Chávez Montes, Mohammad Golam Mostofa, Weiqiang Li, Yasuko Watanabe, Atsushi Fukushima, Maho Tanaka, Motoaki Seki, Kazuki Saito, Luis Herrera-Estrella, Lam-Son Phan Tran (2021). Defective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America (PNAS)118 (48): e2105021118. DOI: https://doi.org/10.1073/pnas.2105021118

Babu Valliyodan, Anne V. Brown, Juexin Wang, Gunvant Patil, Yang Liu, Paul I. Otyama, Rex T. Nelson, Tri Vuong, Qijian Song, Theresa A. Musket, Ruth Wagner, Pradeep Marri, Sam Reddy, Allen Sessions, Xiaolei Wu, David Grant, Philipp E. Bayer, Manish Roorkiwal, Rajeev K. Varshney, Xin Liu, David Edwards, Dong Xu, Trupti Joshi, Steven B. Cannon, Henry T (2021). Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing NguyenGenetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Sci Data 8, 50. DOI: https://doi.org/10.1038/s41597-021-00834-w

Bárbara Moguel, Liseth Pérez, Luis D Alcaraz, Jazmín Blaz, Margarita Caballero, Israel Muñoz-Velasco, Arturo Becerra, Juan P Laclette, Beatriz Ortega-Guerrero, Claudia S Romero-Oliva, Luis Herrera-Estrella, Socorro Lozano-García (2021). Holocene life and microbiome profiling in ancient tropical Lake Chalco, Mexico. Sci Rep 11, 13848. DOI:https://doi.org/10.1038/s41598-021-92981-8

Sergio Alan Cervantes-Pérez, Lenin Yong-Villalobos, Nathalia Florez-Zapata, Araceli Oropeza-Aburto, Félix Rico-Reséndiz, Itzel Amasende-Morales, Tianying Lan, Octavio Martínez, Jean Philippe Vielle-Calzada, Victor A Albert, Luis Herrera-Estrella (2021). Atypical DNA methylation, sRNA-size distribution, and female gametogenesis in Utricularia gibba. Sci Rep 11, 15725. DOI: https://doi.org/10.1038/s41598-021-95054-y

David Gomez-Zepeda,Moises Frausto,Héctor-Rogelio Nájera-González,Luis Herrera-Estrella,José-Juan Ordaz-Ortiz (2021). Mass spectrometry-based quantification and spatial localization of small organic acid exudates in plant roots under phosphorus deficiency and aluminum toxicity. Plant J 2021. DOI: https://doi.org/10.1111/tpj.15261

Bayer PE, Valliyodan B, Hu H, Marsh JI, Yuan Y, Vuong TD, Patil G, Song Q, Batley J, Varshney RK, Lam HM, Nguyen HT (2021). Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding. The Plant Genome. e20109. DOI: https://doi.org/10.1002/tpg2.20109

 

 

2020

Siddiqui N, Mostofa MG, Rahman M, Tahjib-Ul-Arif, Das AK, Mohi-Ud-Din M, Rohman MM, Hafiz HR, Ansary MU, Tran LP (2020). Glutathione improves rice tolerance to submergence: insights into its physiological and biochemical mechanisms. J Biotechnol. DOI: https://doi.org/10.1016/j.jbiotec.2020.11.011

Lakhssassi N, Zhou Z, Liu S, Piya S, Cullen MA, El Baze A, Knizia D, Patil GB, Badad O, Embaby MG, Meksem J (2020).  Soybean TILLING-by-sequencing+ reveals the role of novel GmSACPD members in the unsaturated fatty acid biosynthesis while maintaining healthy nodule. Journal of Experimental Botany. Journal of Experimental Botany 71, 6969–6987. DOI: https://doi.org/10.1093/jxb/eraa402

Nasr Esfahani M, Inoue K, Nguyen KH, Chu HD, Watanabe Y, Kanatani A, Burritt DJ, Mochida K, Tran LP (2020). Phosphate or nitrate imbalance induces stronger molecular responses than combined nutrient deprivation in roots and leaves of chickpea plants. Plant Cell Environ. DOI: https://doi.org/10.1111/pce.13935

Chen L, Yang H, Fang Y, Guo W, Chen H, Zhang X, Dai W, Chen S, Hao Q, Yuan S, Zhang C, Huang Y, Shan Z, Yang Z, Qiu D, Liu X, Tran LP, Zhou X, Cao D (2020). Overexpression of GmMYB14 improves high-density yield and drought tolerance of soybean through regulating plant architecture mediated by the brassinosteroid pathway. Plant Biotech J. DOI: https://doi.org/10.1111/pbi.13496

Kumar N, Kumawat S, Khatri P, Singla P, Tandon G, Bhatt V, Shinde S, Patil GB, Sonah H, Deshmukh R (2020). Understanding aquaporin transport system in highly stress-tolerant and medicinal plant species Jujube (Ziziphus jujuba Mill.). Journal of Biotechnology. 20;324:103-11. DOI:  https://doi.org/10.1016/j.jbiotec.2020.09.026

Patel MK, Kumar M, Li W, Luo Y, Burritt DJ, Alkan N, Tran LP (2020). Enhancing salt tolerance of plants: from metabolic reprogramming to exogenous chemical treatments and molecular approaches. Cells 9:E2492. DOI: https://doi.org/10.3390/cells9112492

Carreras-Villaseñor, N., Rico-Ruiz, G., Chavez-Montes, R., Yong-Villalobos, L., López Hernández, J.F., Martínez-Hernandez, P., Herrera-Estrella, L., Herrera-Estrella, A., López-Arredondo, D. (2020). Assessment of the ptxD gene as a growth and selective marker in Trichoderma atroviride using Pccg6, a novel constitutive promoter.Microbial Cell Factories 19:69. DOI: https://doi.org/10.1186/s12934-020-01326-z

Graham N, Patil GB, Bubeck D, Dobert R, Glenn K, Gutsche A, Kumar S, Lindbo J, Maas L, May G, Vega-Sanchez M, Stupar R, Morrell P (2020). Genome editing in dynamic genetic background: the relevance of “Off-Target”. Plant Physiology, 183, 1453–1471. DOI: https://doi.org/10.1104/pp.19.01194

Rupesh Deshmukh,Nitika Rana,Yang Liu,Shuai Zeng,Gaurav Agarwal,Humira Sonah,Rajeev Varshney,Trupti Joshi,Gunvant B. Patil,Henry T. Nguyen (2020). Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes. Physiologia Plantarum. 171(4):756-70. DOI: https://doi.org/10.1111/ppl.13287

Gaurav Agarwal, Himabindu Kudapa, Abirami Ramalingam, Divya Choudhary, Pallavi Sinha, Vanika Garg, Vikas K Singh, Gunvant B Patil, Manish K Pandey, Henry T Nguyen, Baozhu Guo, Ramanjulu Sunkar, Chad E Niederhuth & Rajeev K Varshney (2020). Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement. Funct Integr Genomics 20, 739–761. DOI: https://doi.org/10.1007/s10142-020-00756-7

Gonzalez-Morales, S., Pacheco, N., Brito-Bello, A., Herrera-Estrella, L., Lopez-Arredondo, D. (2020). Metabolic engineering of phosphite metabolism in Synechococcus elongatus PCC 7942 as an effective measure to control biological contaminants in outdoor raceway ponds. Biotechnology for Biofuels 13:19. DOI: https://doi.org/10.1186/s13068-020-01759-z.

Benedetti, M., Barera, S., Longoni, P., Guardini, Z., Herrero-Garcia, N., Bolzonella, D., Lopez-Arredondo, D., Herrera-Estrella, L., Goldschmidt-Clermont, M., Bassi, R., Dall'Osto, L. (2020). A microalgal-based preparation with synergistic cellulolytic and detoxifying action towards chemical-treated lignocellulose. Plant Biotechnology Journal. DOI: https://doi.org/10.1111/pbi.13447

Wang, S., Chen, A., Xie, K., Yang, X., Chen, J., Lopez-Arredondo, D., Luis Herrera-Estrella L., Xu, G. (2020). Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants. Proceedings of the National Academy of Sciences of the United States of America (PNAS) 117(28): 16649-16659. DOI: https://doi.org/10.1073/pnas.2000926117

Oropeza-Aburto, A., Cervantes-Perez, S.A, Albert, V.A, L Herrera-Estrella. (2020). Agrobacterium tumefaciens mediated transformation of the aquatic carnivorous plant Utricularia gibba. Plant Methods 16:50.DOI: https://doi.org/10.1186/s13007-020-00592-7

Ruiz-Aguilar, B., Raya-González, J., López-Bucio, J. S., Reyes de la Cruz, H., Herrera-Estrella, L., Ruiz-Herrera, L. F., Martínez-Trujillo, M., & López-Bucio, J. (2020). Mutation of MEDIATOR 18 and chromate trigger twinning of the primary root meristem in Arabidopsis. Plant Cell and Environment, 43(8), 1989-1999. DOI: https://doi.org/10.1111/pce.13786

Cutolo, E., Tosoni, M., Barera, S., Herrera-Estrella, L., Dall'Osto, L., Bassi, R. (2020). A Phosphite Dehydrogenase Variant with Promiscuous Access to Nicotinamide Cofactor Pools Sustains Fast Phosphite-Dependent Growth of Transplastomic Chlamydomonas reinhardtii. Plants 9(4):473. DOI:  https://doi.org/10.3390/plants9040473.

Guo, W.,Chen,L., Herrera-Estrella, L., Cao, D., Phan Tran, L-S. (2020). Altering Plant Architecture to Improve Performance and Resistance. Trends in Plant Science. DOI: https://doi.org/10.1016/j.tplants.2020.05.009

Zhizhong Gong, Liming Xiong, Huazhong Shi, Shuhua Yang, Luis R Herrera-Estrella, Guohua Xu, Dai-Yin Chao, Jingrui Li, Peng-Yun Wang, Feng Qin, Jigang Li, Yanglin Ding, Yiting Shi, Yu Wang, Yongqing Yang, Yan Guo, Jian-Kang Zhu. (2020). Plant abiotic stress response and nutrient use efficiency. Sience CHina Life Sciences, Volume 63 , Issue 5 : 635-674(2020). DOI:  https://doi.org/10.1007/s11427-020-1683-x

Rico-Reséndiz, F.; Cervantes-Pérez, S.A.; Espinal-Centeno, A.; Dipp-Álvarez, M.; Oropeza-Aburto, A.; Hurtado-Bautista, E.; Cruz-Hernández, A.; Bowman, J.L.; Ishizaki, K.; Arteaga-Vázquez, M.A.; Herrera-Estrella, L.; Cruz-Ramírez, A. (2020). Transcriptional and Morpho-Physiological Responses of Marchantia polymorpha upon Phosphate Starvation. Int. J. Mol. Sci. 2020, 21, 8354. DOI: https://doi.org/10.3390/ijms21218354

Alejo-Jacuinde, G., González-Morales, S.I., Oropeza-Aburto, A. June Simpson, Luis Herrera-Estrella (2020). Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species. BMC Plant Biol 20, 468. DOI:https://doi.org/10.1186/s12870-020-02638-3

Ojeda-Rivera JO, Oropeza-Aburto A, Herrera-Estrella L (2020). Dissection of Root Transcriptional Responses to Low pH, Aluminum Toxicity and Iron Excess Under Pi-Limiting Conditions in Arabidopsis Wild-Type and stop1 Seedlings. Front. Plant Sci. 11:01200. DOI: https://doi.org/10.3389/fpls.2020.01200

Aragón-Raygoza, A.; Vasco, A.; Blilou, I.; Herrera-Estrella, L.; Cruz-Ramírez, A. (2020). Development and Cell Cycle Activity of the Root Apical Meristem in the Fern Ceratopteris richardii. Genes 2020, 11, 1455. DOI: https://doi.org/10.3390/genes11121455

2019

Martha Rendón-Anaya, Enrique Ibarra-Laclette, Alfonso Méndez-Bravo, Tianying Lan, Chunfang Zheng, Lorenzo Carretero-Paulet, Claudia Anahí Perez-Torres, Alejandra Chacón-López, Gustavo Hernandez-Guzmán, Tien-Hao Chang, Kimberly M Farr, W Brad Barbazuk, Srikar Chamala, Marek Mutwil, Devendra Shivhare, David Alvarez-Ponce, Neena Mitter, Alice Hayward, Stephen Fletcher, Julio Rozas, Alejandro Sánchez Gracia, David Kuhn, Alejandro F Barrientos-Priego, Jarkko Salojärvi, Pablo Librado, David Sankoff, Alfredo Herrera-Estrella, Victor A Albert, Luis Herrera-Estrella (2019). The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation. Proceedings of the National Academy of Sciences 08/2019. DOI:https://www.pnas.org/doi/10.1073/pnas.1822129116

Science Outreach

Luis Herrera-Estrella (2020). My journey into the birth of plant transgenesis and its impact on modern plant biology. Pioneers in Plant Biotechnology. Volume18, Issue7, 1487-1491. DOI: https://doi.org/10.1111/pbi.13319