Dr. Yehia Mechref
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Title: |
Associate Professor |
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Education: |
Ph.D., Oklahoma State University; Postdoctoral Study, Indiana University |
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Research Area: |
Analytical Chemistry |
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Office: |
Chemistry 328-D |
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Principal Research Interests
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The current advances in bioanalytical methods and instrumentation have greatly facilitated the understanding of biological processes at the molecular level. Every living organism in its environment represents a biochemically unique system whose biological functions can be better understood through analytical measurements. Isolated analytical measurements, which may help assessing the state of health within the organisms under study, are now routinely being made. Distinguishing between the “apparently healthy” and “diseased” individuals in clinical chemistry assays is often complicated by the biochemical individuality which has been recognized as an experimental complication of acquiring data from human subjects. Moreover, this aspect commonly results in considerable ranges for both often exist.
The rapidly developing fields of genomics, transcriptomics, proteomics, glycomics, and metabolomics are generating a vast body of biochemical information which is only sorted out through Systems Biology. Systems Biology, here, is referring to the strategy of pursuing integration of complex data about the interactions in biological systems from diverse bioanalytical techniques using multidisciplinary tools and personnel. Many research laboratories have been focusing their efforts on the overwhelming task of characterizing proteins and their voluminous posttranslation modifications following the Human Genome Project and the subsequent efforts to characterize the genomes of model animals. Inquiries into the glycomes and metabolomes of physiological fluids and tissues have been prompted by the unprecedented advances in biomolecular characterization and quantification of proteins. The abality to address these inquiries have been mainly attributed to the methodological/technological advances in biomolecular mass spectrometry and microscale separation science, as well as to the greatly improved computational capabilities (bioinformatics) which is facilitating fast data visualization and interpretation. The overarching activities in my research group are focused on the utility of molecular mass spectrometry to understand biomolecular changes attributing to disease development and progression.
Glycomics and glycoproteomics continue to be highly dynamic and interesting research areas due to the needs to comprehensively understand the biological attributes of glycosylation in many important biological functions such as immune response, cell development, cellular differentiation/adhesion and host-pathogen interactions. Moreover, aberrant glycosylation for decades has been recognized as the attribute of many mammalian diseases, including osteoarthritis, cystic fibrosis and cancer. This being said, glycomic and glycoproteomic analyses remain to be analytically very challenging mainly due to the high complexity and microheterogeneity of glycosylation processes and machineries. Therefore, more cutting-edge-analytical approaches are needed to allow more comprehensive characterization of glycosylation and subsequently better understanding of its biological roles. The ultimate goal of the research activities of my group is the comprehensive characterization of glycoprotein glycosylation sites and microheterogeneity of such sites. Accordingly, we are developing several glycomic and glycoproteomic approaches facilitating the achievement of this ultimate goal. Since interpretation and processing of glycomic and glycoproteomic data is laborious and time consuming, we are also collaborating with bioinformatics experts to develop different bioinformatic tools aiding rapid and automated data interpretation and processing. These research activities are intended to facilitate the analysis of large numbers of biological samples, thus facilitating a better understanding of disease development and progression at a molecular level.
Representative Publications
Book Chapter (5 out of 9)
- Y. Mechref "Monosaccharide Compositional Analysis of Glycoproteins and Glycolipids: Utility in the diagnosis/prognosis of Diseases", in N. Volpi, (ed.) Capillary Electrophoresis of Carbohydrates. From Monosaccharide to Complex Polysaccharides, 2010, Humana Press, Secaucus, NJ.
- Y. Mechref, and M. V. Novotny, "High-sensitivity analytical approaches to the analysis of N-glycans", in R.D. Cummings and J.M. Pierce, (eds.) Handbook of Glycomics, 2009, Academic (Elsevier) Press, San Diego, CA.
- H. Tang, M. Dalkilic, Y. Mechref, "Biomarker Discovery by Mining Glycomic and Lipidomic Data", in J. Y. Chen, S. Lonardi (eds.) Biological Data Mining, Chapman and Hall, 2009, 629-650.
- Y. Mechref, P. Kang and M. V. Novotny, "Solid-phase Permethylation for Glycomic Analysis", in N. Parker and N. Karlsson (ed.), Glycomic and Glycoproteomic Approaches, Methods in Molecular Biology book series, 534, 53-64, published by Humana Press, USA, 2009.
- Y. Mechref, M. Madera and M. V. Novotny, "Assigning Glycoproteins Glycosylation sites and Microheterogeneity by Liquid Chromatography/Tandem Mass Spectrometryipton", in M. Lipton and L. Pasa-Tolic (ed.), Mass spectrometry of proteins and peptides, Methods in Molecular Biology book series, 492 (Mass Spectrometry of Proteins and Peptides) 161-180. published by Humana Press, USA, 2009.
Review Articles (2 out of 7)
- Y. Mechref and M. Novotny "Glycomics and Gycoproteomics by Capillary Electrophoresis-Mass Spectrometry", Mass Spectrometry Reviews, 28 (2009) 207-222.
- M. V. Novotny, H. A. Soini, Y. Mechref "Biochemical Individuality Reflected in Chromatographic, Electrophoretic and Mass-Spectrometric Profiles", J. Chromatogr. B, 866 (2008) 26-47.
Research Papers (101 in print, # co-corresponding author, * corresponding author)
- Zexi Zhuang, Indranil Mitra, Ahmed Hussein, Milos V. Novotny, Yehia Mechref, Stephen C. Jacobson, "Microchip electrophoresis of N-glycans on serpentine separation channels with asymmetrically tapered turns" Electrophoresis, 32 (2011) 246-253.
- Matthew R. Richardson, Zaneer M. Segu, Marianne O. Price, Xianyin Lai, Frank A. Witzmann, Yehia Mechref, Mervin C. Yoder, Francis W Price "Alterations in the aqueous humor proteome in patients with Fuchs endothelial corneal dystrophy"Molecular Vision, 16 (2010) 2376-2383.
- Robert E. Birdsall , Michael P. Kiley , Zaneer M. Segu , Christopher D. Palmer , Milan Madera , Brooks B. Gump , James A. MacKenzie , Patrick J. Parsons , Yehia Mechref , Milos V Novotny and Kestutis G Bendinskas "Effects of lead and mercury on the blood proteome of children" J. Proteome Res., 9 (2010) 4443-4453.
- Matthew B. West, Zaneer M. Segu, Christa L. Feasley, Pilsoo Kang, Iveta Klouckova, Chenglong Li, Milos V. Novotny, Christopher M. West, Yehia Mechref, and Marie H. Hanigan "Analysis of site-specific glycosylation of renal and hepatic γ-glutamyl transpeptidase from normal human tissue"J. Biol. Chem. 285 (2010) 29511-29524.
- * Zaneer M. Segu, Loubna A Hammad and Yehia Mechref "Rapid and Efficient Glycoprotein Identification through Microwave-assisted Enzymatic Digestion", Rapid Commun. Mass Spectrom., 24 (2010) 3461-3468.
- * Zaneer M. Segu, Ahmed Hussein, Milos V. Novotny and Yehia Mechref "Assigning N-Glycosylation Sites of Glycoproteins using LC/MSMS in Conjunction with Endo-M/Exoglycosidase" J. Proteome Res. 9 (2010) 3598–3607.
- * Loubna A. Hammad, Dakota Z. Derryberry, Yazen R. Jmeian, and Yehia Mechref "Multiple-Reaction Monitoring Liquid Chromatography Mass Spectrometry Using an Aminopropyl Column for the Quantification of Bound N-linked Monosaccharides in Glycoproteins and Blood Serum"Rapid Commun. Mass Spectrom., 24 (2010) 1565-1574.
- Yin Wu, Yehia Mechref, Iveta Klouckova, Anoop Mayampurath, Milos V. Novotny, Haixu Tang "Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry", Rapid Commun. Mass Spectrom., 24 (2010) 965-972.
- * Z. M. Segu and Y. Mechref "Characterizing Protein Glycosylation Sites through Higher-Energy C-Trap Dissociation", Rapid Commun. Mass Spectrom., 24 (2010) 1217-1225.
- # Y. Sari, L. A. Hammad, M. M. Saleh, G. V. Rebec, Y. Mechref, "Alteration of selective neurotransmitters in fetal brains of alcohol treated prenatally C57BL/6 mice: quantitative analysis using liquid chromatography/tandem mass spectrometry methods", Int. Dev. J. Neurosci., 28 (2010) 263-269.
- # Y. Sari, M. Zhang, Y. Mechref "Differential expression of proteins in fetal brains of alcohol-treated prenatally C57BL/6 mice: a proteomic investigation" Electrophoresis, 31 (2009) 483-496.
- # M. Lei, M. V. Novotny, Y Mechref "Sequential Enrichment of Sulfated Glycans by Strong Anion-exchange Chromatography prior to Mass Spectrometric Measurements,"J. Am. Soc. Mass Spectrom., 21 (2010) 348-357.
- # J. A. Goetz, M. V. Novotny and Y. Mechref "Enzymatic/Chemical Release of O-Glycans Allowing MS Analysis at High Sensitivity"Anal. Chem., 81 (2009) 9546-9552.
- # M. Lei, Y Mechref, M. V. Novotny, "Structural Analysis of Sulfated Glycans by Sequential Double-Permethylation using Methyl Iodide and Deuteromethyl Iodide,"J. Am. Soc. Mass Spectrom., 20, (2009) 1660-1671.
- # Y. Mechref, A. Hussein, S. Bekesova, V. Pungpapong, M. Zhang, L. E. Dobrolecki, R. J. Hickey, Z. T. Hammoud, M. V. Novotny "Quantitative Serum Glycomics of Esophageal Adenocarcinoma, and Other Esophageal Disease Onsets", J. Protoeme Res., 8(6) (2009) 2656-2666.
- *L. A. Hammad, M. Neely, B. Bridge, Y. Mechref, "Fast Liquid Chromatography Separation and Multiple-Reaction Monitoring Mass Spectrometric Detection of Neurotransmitters"J. Sep. Sci., 32(14) (2009) 2369-2376.
- *L. A. Hammad, M. M. Saleh, M. V. Novotny, Y. Mechref, "Multiple-Reaction Monitoring Liquid Chromatography Mass Spectrometry for Monosaccharide Compositional Analysis of Glycoproteins"J. Am. Soc. Mass Spectrom., 20 (2009) 1224-1234.
- * L. A. Hammad, G. Wu, M. A. Saleh, I. Klouckova, L.E. Dobrolecki, R.J. Hickey, M.V. Novotny, Y. Mechref "Comparing the Lipidome of Blood Serum Samples Collected from Disease-Free Subjects and Breast Cancer Patients"Rapid Commun. Mass Spectrom., 23 (2009) 863-876.
- # J.A. Goetz, Y. Mechref, P. Kang, M-H. Jeng, M.V. Novotny "Glycomic Profiling of Invasive and Non-invasive Breast Cancer Cells"Glycoconjugate J., 26 (2009) 117-131.
- # W.R. Alley, Jr., M.V. Novotny, Y. Mechref "Graphitized Carbon as a Stationary Phase for Chip-based Separations of Tryptic Glycopeptides prior to Tandem Mass Spectral Analysis."Rapid Commun. Mass Spectrom., 23 (2009) 495-505.
- # W.R. Alley, Jr., Y. Mechref, M.V. Novotny, "Collision-induced Dissociation and Electron transfer Dissociation in the Characterization of Glycopeptides."Rapid Commun. Mass Spectrom., 23 (2009) 161-170.
