Texas Tech University

Catherine Wakeman, Ph.D.

Associate Professor
Department of Biological Sciences

Email: catherine.wakeman@ttu.edu

Phone: +1 (806) 834-5825

Infectious diseases, polymicrobial interactions, and biofilm community structure

Research Groups:
Cell & Molecular Biology, Microbiology & Immunology 

Office:
Biology 204

Current Graduate Students:

 Web Links

Dr. Catherine Wakeman

Education

  • Postdoc, Department of Pathology, Microbiology, and Immunology, Vanderbilt University (2011-2016)
  • Postdoc, Department of Biochemistry, University of Texas Southwestern Medical Center (2010-2011)
  • Ph.D., Molecular Microbiology, University of Texas Southwestern Medical Center (2009)
  • B.S., Biology, Louisiana Tech University (2004)

Research Interests

Microbial interactions during infection: During infection, invading pathogens experience various environmental stresses and are often found in polymicrobial communities. Within the various microenvironments of the human host, pathogens and commensals both compete and cooperate in order to combat the stresses experienced during infection. Our studies focus on Pseudomonas aeruginosa and Staphylococcus aureus interactions because these pathogens often co-infect sites ranging from diabetic foot ulcers to the cystic fibrosis lung and therefore represent a substantial medical problem.  We hypothesize that cooperation between these organisms is occurring within select microenvironments sampled during infection. We seek to understand the specific mechanism underlying co-infection (for example, the repression of P. aeruginosa production of anti-microbial compounds), and to determine whether or not P. aeruginosa and S. aureus can act cooperatively within certain host microenvironments in order to exacerbate disease.

Cellular differentiation in biofilms: Biofilms are multicellular microbial communities that represent the most common lifestyle of many microorganisms. Biofilms can persist in a wide range of environments in part because they contain differentiated subpopulations of cells that serve defined roles in the microbial community to promote the overall health of the biofilm. Through collaborations with mass spectrometry experts at Vanderbilt University, we have identified a number of previously uncharacterized P. aeruginosa biofilm subpopulations via the application of a newly emerging technology known as MALDI imaging mass spectrometry. We hypothesize that these subpopulations exist in order to withstand environmental insults that P. aeruginosa encounters in one or more of the many niches known to be occupied by this opportunistic pathogen. We seek to determine the role of these subpopulations in biofilm architecture and survival/persistence in the presence of various environmental stressors.

Metalloregulation of bacterial physiology: Environmental metal fluctuation is one of the primary signals sensed by bacteria to assess entry into a new and challenging environment. This is especially true for pathogens entering the host environment as host-induced metal starvation is an innate immune response designed to limit the growth of invading microorganisms. We have previously shown that metal-limitation induced by the immune protein calprotectin promotes P. aeruginosa and S. aureus co-culture and that metal fluctuations within P. aeruginosa biofilms are responsible for much of the observed cellular differentiation within biofilm communities. We seek to determine the mechanisms by which metal levels are sensed in order to elicit these physiological responses.

Selected Publications

2023

Black, C.; Al Mahmud, H.; Howle, V.; Wilson, S.; Smith, A.C.; Wakeman, C.A. Development of a Polymicrobial Checkerboard Assay as a Tool for Determining Combinatorial Antibiotic Effectiveness in Polymicrobial Communities. Antibiotics 2023, 12, 1207. https://doi.org/10.3390/antibiotics12071207

Bisht K, Luecke AR, Wakeman CA. Temperature-specific adaptations and genetic requirements in a biofilm formed by Pseudomonas aeruginosa. Front Microbiol. 2023 Jan 6. https://doi.org/10.3389/fmicb.2022.1032520

2022

Islam S, Callender AC, Ho QN, Wakeman CA. Iron restriction induces the small-colony variant phenotype in Staphylococcus aureus. Front Microbiol. 2022 Dec 8;13:978859. https://doi.org/10.3389/fmicb.2022.978859

Baishya, J, Everett, JA, Chazin, WJ, Rumbaugh, KP , & Wakeman, CA. The innate immune protein calprotectin interacts with and encases biofilm communities of pseudomonas aeruginosa and Staphylococcus aureus. Frontiers in Cellular and Infection Microbiology, 2022 July 13. https://doi.org/10.3389/fcimb.2022.898796

​​Varela K, Al Mahmud H, Arman HD, Martinez LR, Wakeman CA, Yoshimoto FK. Autoxidation of a C2-Olefinated Dihydroartemisinic Acid Analogue to Form an Aromatic Ring: Application to Serrulatene Biosynthesis. J Nat Prod. 2022 Apr 22. https://doi.org/10.1021/acs.jnatprod.1c0110

2021

​Hill BM, Bisht K, Atkins GR, Gomez AA, Rumbaugh KP, Wakeman CA, Brown AMV. Lysis-Hi-C as a method to study polymicrobial communities and eDNA. Mol Ecol Resour. 2021 Oct 20. https://doi.org/10.1111/1755-0998.13535 

Moamen M. Elmassry, Karishma Bisht, Jane Colmer-Hamood, Catherine A. Wakeman, Michael J. San Francisco & Abdul N. Hamood. Malonate utilization by Pseudomonas aeruginosa affects quorum-sensing and virulence and leads to formation of mineralized biofilm-like structures. April 2021. Molecular Microbiology. https://doi.org/10.1111/mmi.14729

 Herrin BE, Islam S, Rentschler KN, Pert LH, Kopanski SP, Wakeman CA. Haem toxicity provides a competitive advantage to the clinically relevant Staphylococcus aureus small colony variant phenotype. Microbiology (Reading). 2021 Mar 22. https://doi.org/10.1099/mic.0.001044 

 Bisht, K., Moore, J.L., Caprioli, R.M., Skaar, E.P. & Wakeman, C.A. Impact of temperature-dependent phage expression on Pseudomonas aeruginosa biofilm formation. npj Biofilms Microbiomes 7, 22 (2021). https://doi.org/10.1038/s41522-021-00194-8

 Al Mahmud, H.; Baishya, J.; Wakeman, C.A. Interspecies Metabolic Complementation in Cystic Fibrosis Pathogens via Purine Exchange. Pathogens 2021, 10, 146. https://doi.org/10.3390/pathogens10020146

 Baishya, J.*; Bisht, K.*; Rimbey, J.N.*; Yihunie, K.D.*; Islam, S.*; Al Mahmud, H.*; Waller, J.E.; Wakeman, C.A. The Impact of Intraspecies and Interspecies Bacterial Interactions on Disease Outcome. Pathogens 2021, 10, 96. https://doi.org/10.3390/pathogens10020096

2020

Saba Nafees, Sean H Rice, Catherine A Wakeman, Analyzing genomic data using tensor-based orthogonal polynomials with application to synthetic RNAs, NAR Genomics and Bioinformatics, Volume 2, Issue 4, December 2020, lqaa101, https://doi.org/10.1093/nargab/lqaa101

 Bisht K, Baishya J, Wakeman CA. Pseudomonas aeruginosa polymicrobial interactions during lung infection. Curr Opin Microbiol. 2020 Feb;53:1-8. https://doi.org/10.1016/j.mib.2020.01.014

2019

Bisht K and Wakeman CA (2019) Discovery and Therapeutic Targeting of Differentiated Biofilm Subpopulations. Front. Microbiol. 10:1908. https://doi.org/10.3389/fmicb.2019.01908

 Baishya, J., Wakeman, C.A. Selective pressures during chronic infection drive microbial competition and cooperation. NPJ Biofilms Microbiomes. 2019 Jun 7;5:16. https://doi.org/10.1038/s41522-019-0089-2

2018

Ayala, O.M., Wakeman, C.A., Pence, I.J., Gaddy, J.A., Slaughter, J.C., Skaar, E.P., and Mahadevan-Jansen, A. (2018) Drug-resistant Staphylococcus aureus reveal distinct biochemical features with Raman microspectroscopy. ACS Infectious Diseases. https://doi.org/10.1021/acsinfecdis.8b00029