Publications

1. de los Reyes BG (2019) Genomic and epigenomic bases of transgressive segregation – New breeding paradigm for novel plant phenotypes. Plant Science 288:110213.
2. Mohanty B, Takahashi H, de los Reyes BG, Wijaya E, Nakazono M, Lee DY (2016) Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for cell survival under complete submergence. RICE 9:e51.
3. Mohanty B, Lakshmanan M, Kitazumi A, Cheung CYM, De los Reyes BG, Jang IC, Lee DY (2016) Validation of critical network hubs involved in drought stress response mechanisms by integrating transcriptome data and genome-scale metabolic model: Potential applications for drought tolerance breeding in rice. Plant Science 242:224-239.
4. Kitazumi A, Kawahara Y, Onda TS, De Koeyer D, De los Reyes BG (2015) Implications of miR166 and miR159 induction to the basal response mechanisms of andigena potato (Solanum tuberosum ssp. andigena) to salinity stress predicted from gene network models in Arabidopsis. Genome 58:13-24.
5. De los Reyes BG, Mohanty B, Yun SJ, Park MR, Lee DY (2015) Upstream regulatory architecture of rice genes: Establishing the baseline for genus-wide comparative analysis of regulatory networks and allele mining. RICE 8:e14.
6. Xu F, Park MR, Mohanty B, Herath V, Kitazumi A, Yun SJ, De los Reyes BG (2012) Cis-regulatory signatures among orthologous groups of stress-associated bZIP transcription factors from rice, sorghum and Arabidopsis based on phylogenetic footprints. BMC Genomics 13:e497.
7. Mohanty B, Yeo HC, Wijaya E, De los Reyes BG, Lee D-Y (2012) Patterns of cis-element enrichment revealed potential regulatory modules involved in the regulation of low-oxygen response transcriptome of rice. Gene 511:235-242.
8. De los Reyes BG, Yun SJ, Herath V, Xu F, Park MR, Lee JI, Kim KY (2012) Phenotypic, physiological and molecular evaluation of chilling stress response of rice at the vegetative stage. In: Methods in Molecular Biology: Rice Protocol Series, Volume 956, Y. Yang (editor), Humana Press-Springer Science, ISBN 978-1-62703-193-6. [EDITED BOOK CHAPTER]
9. Park MR, Baek S-H, De los Reyes BG, Yun SJ, Hasenstein KH (2012) Transcriptome profiling characterizes phosphate deficiency effects on carbohydrate metabolism in rice leaves. Journal of Plant Physiology 169:193-205.
10. Rioux R, Manmathan H, Jia Y, De los Reyes BG, Tavantzis S (2011). Comparative analysis of putative pathogenesis-related gene expression in two Rhizoctonia solani pathosystems. Current Genetics 57:391-408.
11. Park MR, Yun KY, Herath V, Mohanty B, Xu F, Bajic VB, Yun SJ, De los Reyes BG (2010) Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development. Plant Cell and Environment 33:2209-2230.
12. Yun KY, Park MR, Mohanty B, Herath V, Xu F, Mauleon R, Wijaya E, Bajic VB, Bruskiewich R, De los Reyes BG (2010) Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress. BMC Plant Biology 10:e16. [HIGHLY ACCESSED]
13. Zhang Y, Xuan J, De los Reyes BG, Clarke R, Ressom HW (2010) Reconstruction of gene regulatory modules in cancer cell cycle by multi-source data integration. PLoSOne 5:4-e10268.
14. Ressom HW, Lakshman D, Yun SJ, Pramanik SK, De los Reyes BG (2009) Microarray data analysis using machine learning methods. In: Biosystems Engineering, A. Nag (editor), McGraw Hill Pub., pp. 1-32. [EDITED BOOK CHAPTER]
15. Zhang Y, Xuan J, De los Reyes BG, Clarke R, Ressom HW (2009) Reverse engineering module networks by PSO-RNN hybrid modeling. BMC Genomics 10:S15e.
16. Antoine W, de los Reyes BG, Miernyk JA, Stewart JM (2009) Molecular evolution of the plant SLT protein family. Icfai University Journal of Genetics and Evolution 2:56-73.
17. Zhang Y, Xuan J, De los Reyes BG, Clarke R, Ressom HW (2008) Identification of network motifs for transcription factors by integrating multi-source biological data. BMC Bioinformatics 9:e203. [HIGHLY ACCESSED]
18. De los Reyes BG, Lakshman D, Yun SJ, Ressom H (2008) Agricultural genomics. In: Agricultural Biotechnology, A. Nag (editor), PHI Learning Private Ltd., pp. 55-88. [EDITED BOOK CHAPTER]
19. Irish BM, Corell JM, Feng C, Bentley T, De los Reyes BG (2007) Characterization of a resistance locus (Pfs-1) to the spinach downy mildew pathogen (Peronospora farinosa f. sp. spinaciae) and development and evaluation of a co-dominant molecular marker linked to Pfs1. Phytopathology 98:894-900.
20. Cheng C, Yun KY, Ressom H, Mohanty B, Bajic VB, Jia Y, Yun SJ, De los Reyes BG (2007) An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice. BMC Genomics 8:e175.
21. Park MR, Baek SH, De los Reyes BG, Yun SJ (2007) Overexpression of a high-affinity transporter gene from tobacco (NtPT1) enhances phosphate uptake and accumulation in transgenic rice plants. Plant and Soil 292:259-269.
22. Ballou S, Yun KY, Cheng C, De los Reyes BG (2007) Cold sensitivity gradient in tuber-bearing Solanum based on physiological and transcript profiles. Crop Science 47:2027-2035.
23. Chen Y, Chen P, De los Reyes BG (2006) Differential responses of cultivated (Glycine max) and wild (Glycine soja) species of soybeans to dehydration stress. Crop Science 46:2041-2046.
24. Antoine W, Stewart JM, De los Reyes BG (2005) The rice homolog of the sodium/lithium tolerance (SLT1) gene functions as molecular chaperone in vitro. Physiologia Plantarum 125: 299-310.
25. Morsy MR, Almutairi AM, Gibbons J, Yun SJ, De los Reyes BG (2005) The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature. Gene 344:171-180.
26. Cho EA, Lee CA, Kim YS, Baek SH, De los Reyes BG, Yun SJ (2005) Expression of γ-tocopherol methyltransferase improves tocopherol composition in lettuce (Latuca sativa L.). Molecules and Cells 19:16-22.
27. Choi DG, Yoo NH, Yu CH, De los Reyes BG, Yun SJ (2004) The activities of antioxidant enzymes in response to oxidative stresses and hormones in paraquat-tolerant Rehmannia glutinosa plants. Journal of Biochemistry and Molecular Biology 37:618-624.
28. McGrath JM, Shaw RS, De los Reyes BG, Weiland J (2004) Construction of a sugar beet BAC library from a hybrid that combines diverse traits. Plant Molecular Biology Reporter 22:23-28.
29. De los Reyes BG, Morsy M, Gibbons J, Varma TSN, Antoine W, McGrath JM, Halgren R, Redus M (2003) A snapshot of the low temperature stress transcriptome of developing rice seedlings (Oryza sativa L.) via ESTs from subtracted cDNA library. Theoretical and Applied Genetics 107:1071-1082.
30. De los Reyes BG, Myers SJ, McGrath JM (2003) Induction of glyoxylate cycle enzymes by stress as a marker for seedling vigor in sugar beet (Beta vulgaris L.). Molecular Genetics and Genomics 269:692-698.
31. De los Reyes BG, McGrath JM (2003) Cultivar-specific seedling vigor and expression of a putative oxalate oxidase germin-like protein in sugar beet (Beta vulgaris L.). Theoretical and Applied Genetics 107:54-61.
32. Multani DS, Khush GS, De los Reyes BG, Brar DS (2003) Alien gene introgression and development of monosomic alien addition lines from Oryza latifolia Desv. to rice, Oryza sativa L. Theoretical and Applied Genetics 107:395-405.
33. De los Reyes BG, Taliaferro CM, Anderson MP, Anderson JA, Melcher UK, MacMaugh S (2001) Induced expression of class II chitinase gene during cold acclimation and dehydration of bermudagrass (Cynodon sp.). Theoretical and Applied Genetics 103:297-306.
34. De los Reyes BG, Khush GS, Brar DS (1998) Chromosomal location of isozyme loci in rice through primary trisomics and monosomic alien addition line (MAAL) analyses. Journal of Heredity 89:164-168.
35. Multani DS, Jena KK, Brar DS, De los Reyes BG, Angeles ER, Khush GS (1994) Development of monosomic alien addition lines and introgression of genes from Oryza australiensis to cultivated rice Oryza sativa. Theoretical and Applied Genetics 88:102-109.